YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41327705
Organism:	Homo sapiens
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41327705.

Description	E-value	Query Range	Subject Range
APITD1 - apoptosis-inducing, TAF9-like domain 1	122.0	[0..1]	[99..40]
gi\|9758240, gi\|1... - gi\|9758240\|dbj\|BAB08739.1\| unnamed protein product [Arabidopsis thaliana], gi\|15241317\|ref\|NP_199906...	106.0	[0..1]	[86..145]
gi\|39946152, gi\|... - gi\|39946152\|ref\|XP_362613.1\| hypothetical protein MG08196.4 [Magnaporthe grisea 70-15], gb\|EAA57227....	102.0	[0..14]	[92..1]
gi\|85102562 - gi\|85102562\|ref\|XP_961356.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro... gi\|12718388, gi\|... - gi\|32404636\|ref\|XP_322931.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro...	97.0	[0..1]	[79..35]
CENPS_BOVIN - Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1	97.0	[0..1]	[99..40]
gi\|73950936 - gi\|73950936\|ref\|XP_544575.2\| PREDICTED: similar to apoptosis-inducing, TAF9-like domain 1 isoform A ...	95.0	[0..1]	[93..288]
CENPS_MOUSE - Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1	94.0	[0..1]	[88..39]
gi\|46125567, gi\|... - gi\|46125567\|ref\|XP_387337.1\| hypothetical protein FG07161.1 [Gibberella zeae PH-1], gi\|42553777\|gb\|E...	94.0	[0..2]	[79..35]
gi\|159131058 - gi\|159131058\|gb\|EDP56171.1\| transcription initiation factor TFIID subunit 13, putative [Aspergillus ... gi\|66849937, gi\|... - gi\|70995072\|ref\|XP_752302.1\| transcription initiation factor TFIID subunit 13 [Aspergillus fumigatus...	92.0	[0..5]	[96..171]
gi\|67521792, gi\|... - gi\|67521792\|ref\|XP_658957.1\| hypothetical protein AN1353.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	91.0	[0..5]	[72..50]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSKQTIAA ISELTFRQCE NFAKDLEMFA RHAKRTTINT EDVKLLARRS NSLLKYITDK  60
   61 SEEIAQINLE RKAQKKKKSE DGSKNSRQPA EAGVVESEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.22
Match:	1f1eA
Description:	Archaeal histone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits