YRC Public Data Repository - Protein Structure Prediction

Protein:	VMO1
Organism:	Homo sapiens
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMO1.

Description	E-value	Query Range	Subject Range
gi\|114665812 - gi\|114665812\|ref\|XP_001161578.1\| PREDICTED: secretory protein LOC284013 [Pan troglodytes]	2.0E-67	[1..202]	[1..202]
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1	3.0E-67	[9..201]	[27..221]
gi\|109112862 - gi\|109112862\|ref\|XP_001096435.1\| PREDICTED: similar to Vitelline membrane outer layer protein 1 homo...	5.0E-64	[1..200]	[1..200]
gi\|157769389 - gi\|157769389\|ref\|XP_001676515.1\| Hypothetical protein CBG14364 [Caenorhabditis briggsae AF16] gi\|39597845, gi\|... - gi\|39597845\|emb\|CAE68537.1\| Hypothetical protein CBG14364 [Caenorhabditis briggsae], gi\|187027850\|em...	4.0E-62	[23..201]	[152..351]
gi\|57086583 - gi\|57086583\|ref\|XP_546575.1\| PREDICTED: similar to Protein UNQ6350/PRO21055 homolog precursor [Canis...	4.0E-61	[1..202]	[1..201]
gi\|109491162, gi... - gi\|62656365\|ref\|XP_340833.2\| PREDICTED: similar to Vitelline membrane outer layer protein 1 homolog ...	6.0E-60	[32..202]	[31..201]
gi\|157169812 - gi\|157169812\|gb\|AAI52837.1\| Vitelline membrane outer layer 1 homolog (chicken) [synthetic construct] VMO1_MOUSE - Vitelline membrane outer layer protein 1 homolog OS=Mus musculus GN=Vmo1 PE=3 SV=1	1.0E-58	[32..202]	[31..201]
gi\|50731105 - gi\|50731105\|ref\|XP_417168.1\| PREDICTED: similar to vitelline membrane outer layer protein I [Gallus ...	2.0E-57	[21..201]	[154..324]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERGAGAKLL PLLLLLRATG FTCAQTDGRN GYTAVIEVTS GGPWGDWAWP EMCPDGFFAS  60
   61 GFSLKVEPPQ GIPGDDTALN GIRLHCARGN VLGNTHVVES QSGSWGEWSE PLWCRGGAYL 120
  121 VAFSLRVEAP TTLGDNTAAN NVRFRCSDGE ELQGPGLSWG DFGDWSDHCP KGACGLQTKI 180
  181 QGPRGLGDDT ALNDARLFCC RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.09691
Match:	1vmoA
Description:	Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits