YRC Public Data Repository - Protein Structure Prediction

Protein:	ACN9
Organism:	Homo sapiens
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACN9.

Description	E-value	Query Range	Subject Range
SDHF3_MOUSE - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Mus musculus GN=Sdhaf3 PE=2 SV=1	203.0	[0..1]	[125..1]
gi\|114614664 - gi\|114614664\|ref\|XP_001171009.1\| PREDICTED: ACN9 homolog isoform 2 [Pan troglodytes]	201.0	[0..1]	[125..1]
gi\|109067419 - gi\|109067419\|ref\|XP_001089986.1\| PREDICTED: ACN9 homolog (S. cerevisiae) [Macaca mulatta]	198.0	[0..1]	[125..1]
SDHF3_RAT - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Rattus norvegicus GN=Sdhaf3 PE=2 SV=2	198.0	[0..1]	[123..1]
gi\|73976411 - gi\|73976411\|ref\|XP_852786.1\| PREDICTED: similar to ACN9 homolog [Canis familiaris]	187.0	[0..1]	[125..1]
SDHF3_BOVIN - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Bos taurus GN=SDHAF3 PE=2 SV=1	180.0	[0..1]	[125..1]
gi\|194199098, gi... - gi\|195570352\|ref\|XP_002103171.1\| GD20284 [Drosophila simulans], gi\|194199098\|gb\|EDX12674.1\| GD20284 ... CG14898-PA - This gene is referred to in FlyBase by the symbol Dmel\CG14898 (CG14898, FBgn0038437). It is a prote... gi\|220957484 - gi\|220957484\|gb\|ACL91285.1\| CG14898-PA [synthetic construct]	154.0	[0..5]	[109..11]
gi\|116118562, gi... - gi\|119114742\|ref\|XP_001238160.1\| ENSANGP00000031496 [Anopheles gambiae str. PEST], gi\|116118562\|gb\|E...	153.0	[0..5]	[110..4]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRHVSRVR ALYKRVLQLH RVLPPDLKSL GDQYVKDEFR RHKTVGSDEA QRFLQEWEVY  60
   61 ATALLQQANE NRQNSTGKAC FGTFLPEEKL NDFRDEQIGQ LQELMQEATK PNRQFSISES 120
  121 MKPKF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.468521
Match:	PF05882.4
Description:	No description for PF05882.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.842	N/A	N/A	a.29.13	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits