YRC Public Data Repository - Protein Structure Prediction

Protein:	BLVRB
Organism:	Homo sapiens
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BLVRB.

Description	E-value	Query Range	Subject Range
gi\|18978160, gi\|... - gi\|18978160\|ref\|NP_579517.1\| NDP-sugar dehydratase or epimerase [Pyrococcus furiosus DSM 3638], gi\|1...	190.0	[0..1]	[206..1]
gi\|7429922 - pir\|\|A71183 probable UDP-glucose 4-epimerase - Pyrococcus horikoshii gi\|14591500, gi\|... - gi\|3258173\|dbj\|BAA30856.1\| 306aa long hypothetical UDP-glucose 4-epimerase [Pyrococcus horikoshii OT...	188.0	[0..1]	[206..1]
gi\|14520521, gi\|... - gi\|5457737\|emb\|CAB49227.1\| galE-1 UDP-glucose 4-epimerase) [Pyrococcus abyssi GE5], gi\|14520521\|ref\|... gi\|5457737, gi\|7... - pir\|\|D75143 udp-glucose 4-epimerase (gale-1) PAB2145 - Pyrococcus abyssi (strain Orsay), gi\|5457737\|...	186.0	[0..1]	[206..1]
gi\|20093250, gi\|... - gi\|20093250\|ref\|NP_619325.1\| dTDP-glucose 4,6-dehydratase [Methanosarcina acetivorans C2A], gi\|19918...	183.0	[0..4]	[204..1]
gi\|4240415 - gi\|4240415\|gb\|AAD13546.1\| NDP-hexose 4,6-dehydratase homolog [Streptomyces cyanogenus]	182.0	[0..3]	[206..1]
gi\|21227295, gi\|... - gi\|21227295\|ref\|NP_633217.1\| dTDP-glucose 4,6-dehydratase [Methanosarcina mazei Go1], gi\|20905647\|gb...	182.0	[0..4]	[201..1]
gi\|57159263, gi\|... - gi\|57640939\|ref\|YP_183417.1\| UDP-glucose 4-epimerase [Thermococcus kodakarensis KOD1], gi\|57159263\|d...	179.0	[0..2]	[206..3]
gi\|41205692 - gi\|41205692\|gb\|AAR99612.1\| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]	179.0	[0..4]	[206..3]
gi\|167726175, gi... - gi\|169235109\|ref\|YP_001688309.1\| nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase) [... gi\|15789397, gi\|... - pir\|\|A84167 UDP-glucose 4-epimerase [imported] - Halobacterium sp. NRC-1, gi\|15789397\|ref\|NP_279221....	178.0	[0..4]	[203..1]

Back

Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKKIAIFG ATGQTGLTTL AQAVQAGYEV TVLVRDSSRL PSEGPRPAHV VVGDVLQAAD  60
   61 VDKTVAGQDA VIVLLGTRND LSPTTVMSEG ARNIVAAMKA HGVDKVVACT SAFLLWDPTK 120
  121 VPPRLQAVTD DHIRMHKVLR ESGLKYVAVM PPHIGDQPLT GAYTVTLDGR GPSRVISKHD 180
  181 LGHFMLRCLT TDEYDGHSTY PSHQYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1hdoA
Description:	Biliverdin IX beta reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity	0.881088609158401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: