YRC Public Data Repository - Protein Structure Prediction

Protein:	MTRF1
Organism:	Homo sapiens
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTRF1.

Description	E-value	Query Range	Subject Range
MTRF1 - mitochondrial translational release factor 1	0.0	[1..445]	[1..445]
gi\|109120568, gi... - gi\|109120570\|ref\|XP_001090782.1\| PREDICTED: similar to mitochondrial translational release factor 1 ...	0.0	[1..445]	[1..445]
gi\|114651377 - gi\|114651377\|ref\|XP_001150094.1\| PREDICTED: mitochondrial translational release factor 1 isoform 2 [...	0.0	[1..445]	[1..487]
RF1M_MOUSE - Peptide chain release factor 1, mitochondrial OS=Mus musculus GN=Mtrf1 PE=2 SV=1	0.0	[1..445]	[1..446]
RF1M_BOVIN - Peptide chain release factor 1, mitochondrial OS=Bos taurus GN=MTRF1 PE=2 SV=1	0.0	[3..445]	[4..447]
gi\|73989054 - gi\|73989054\|ref\|XP_848713.1\| PREDICTED: similar to mitochondrial translational release factor 1 isof...	0.0	[1..445]	[1..444]

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Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRHLCVWLF RHPSLNGYLQ CHIQLHSHQF RQIHLDTRLQ VFRQNRNCIL HLLSKNWSRR  60
   61 YCHQDTKMLW KHKALQKYME NLSKEYQTLE QCLQHIPVNE ENRRSLNRRH AELAPLAAIY 120
  121 QEIQETEQAI EELESMCKSL NKQDEKQLQE LALEERQTID QKINMLYNEL FQSLVPKEKY 180
  181 DKNDVILEVT AGRTTGGDIC QQFTREIFDM YQNYSCYKHW QFELLNYTPA DYGGLHHAAA 240
  241 RISGDGVYKH LKYEGGIHRV QRIPEVGLSS RMQRIHTGTM SVIVLPQPDE VDVKLDPKDL 300
  301 RIDTFRAKGA GGQHVNKTDS AVRLVHIPTG LVVECQQERS QIKNKEIAFR VLRARLYQQI 360
  361 IEKDKRQQQS ARKLQVGTRA QSERIRTYNF TQDRVSDHRI AYEVRDIKEF LCGGKGLDQL 420
  421 IQRLLQSADE EAIAELLDEH LKSAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	2b3tB
Description:	Molecular basis for bacterial class 1 release factor methylation by PrmC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits