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View Structure Prediction Details

Protein: gi|37622896, gi|...
Organism: Homo sapiens
Length: 718 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37622896, gi|....

Description E-value Query
Range		 Subject
Range
LONF3_MACFA - LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1
 1.0E-92 [1..718] [1..718]
gi|109510362 - gi|109510362|ref|XP_233279.4| PREDICTED: similar to ring finger protein 127 [Rattus norvegicus]
 4.0E-90 [1..718] [1..716]
LONRF3 - LON peptidase N-terminal domain and ring finger 3
 6.0E-90 [1..718] [1..759]
LONF3_MOUSE - LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1
 1.0E-89 [1..718] [1..753]
gi|114689960 - gi|114689960|ref|XP_529131.2| PREDICTED: LON peptidase N-terminal domain and ring finger 3 isoform 2...
 2.0E-89 [1..716] [1..716]
gi|109132033 - gi|109132033|ref|XP_001105445.1| PREDICTED: similar to LON peptidase N-terminal domain and ring fing...
 9.0E-80 [1..667] [1..667]
gi|76630289 - gi|76630289|ref|XP_584932.2| PREDICTED: similar to LON peptidase N-terminal domain and ring finger 3...
 8.0E-79 [1..718] [1..754]

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Predicted Domain #1
Region A:
Residues: [1-411] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVRIEQML SLPAEVSSDN LESAERGASA AQVDMGPHPK VAAEGPAPLP TREPEQEQSP  60
   61 GTSTPESKVL LTQADALASR GRIREALEVY RQLSERQQLV AEQLEQLVRC LAEKVPQGEA 120
  121 LAPAPPDEGS TASGTVAAEE TGAAAAAAAT EVWDGFKCRK CHGFLSDPVS LSCGHTFCKL 180
  181 CLERGRAADR RCALCGVKLS ALMVATGRAR GARRAGQQPP PPLRVNVVLS GLLGKLFPGP 240
  241 ARASQLRHEG NRLYRERQVE AALLKYNEAV KLAPNDHLLY SNRSQIYFTL ESHENALHDA 300
  301 EIACKLRPMG FKDNLELPHC SSQEEAAARG DGSSLMDPAK VKGDGQQHHM KDQEEEEEKW 360
  361 DATSPKAASS KTGKCQEKKR KHCQIESQEE TGMPNKASKQ DPPTDQGDKP A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.02652482814057 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [412-505] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLPLASFDA SDLECALCMR LFYEPVTTPC GHTFCLKCLE RCLDHNAKCP LCKDGLSQCL  60
   61 ASRKYSKNVI MEELIAKFLP EELKERRKLY EEEM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.045757
Match: 1rmdA
Description: RAG1 DIMERIZATION DOMAIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [506-718] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EELSNLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM CLGDPVKGFA  60
   61 EYGCILEIRN VQFFADGRSV VDSIGKRRFR VLHQSQRDGY NTADIEYIED QKVQGEDCAE 120
  121 LMGLHNCVYQ QASLWFHSLK LSLKNRILNH FGPMPEKDAD PQMNPNGPAW CWWMLAVLPL 180
  181 ESRAQLPFLA MRSLKDRLNG IRRVLAFISR NQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.045757
Match: 1zboA
Description: Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle