YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26051206, gi\|...
Organism:	Homo sapiens
Length:	542 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26051206, gi|....

Description	E-value	Query Range	Subject Range
KCC2B_MOUSE, KCC... - (P28652) Calcium/calmodulin-dependent protein kinase type II beta chain (EC 2.7.1.123) (CaM-kinase I...	0.0	[1..542]	[1..542]
gi\|117616248 - gi\|117616248\|gb\|ABK42142.1\| calmodulin-dependent protein kinase II beta [synthetic construct] KCC2B_MOUSE - Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Mus musculus GN=Camk2b PE=1 SV=2 gi\|149047659, gi... - gi\|149047661\|gb\|EDM00331.1\| calcium/calmodulin-dependent protein kinase II, beta, isoform CRA_a [Rat...	0.0	[1..542]	[1..542]
gi\|62896965 - gi\|62896965\|dbj\|BAD96423.1\| calcium/calmodulin-dependent protein kinase IIB isoform 2 variant [Homo ...	0.0	[1..542]	[1..542]
KCC2B_BOVIN - Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Bos taurus GN=CAMK2B PE=2 SV=1	0.0	[1..542]	[1..542]
gi\|148232260, gi... - gi\|466360\|gb\|AAA81938.1\| calmodulin dependent protein kinase II beta subunit, gi\|213627750\|gb\|AAI694...	0.0	[6..542]	[4..540]
gi\|73953045 - gi\|73953045\|ref\|XP_863906.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	0.0	[1..542]	[1..542]
gi\|46048967, gi\|... - gi\|46048967\|ref\|NP_989625.1\| calcium/calmodulin-dependent protein kinase II beta [Gallus gallus], gi...	0.0	[1..542]	[1..540]

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Predicted Domain #1

Region A:
Residues: [1-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTCTRF TDEYQLYEDI GKGAFSVVRR CVKLCTGHEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH SNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 120
  121 LEAVLHCHQM GVVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 180
  181 LSPEVLRKEA YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITAHEALKHP WVCQRSTVAS MMHRQETVEC LKKFNARRKL 300
  301 KGAILTTMLA TRNFSVGRQT TAPATMSTAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.522879
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [331-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGTTMGLVEQ AKSLLNKKAD GVKPQTNSTK NSAAATSPKG TLPPAALEPQ TTVIHNPVDG  60
   61 IKESSDSANT TIEDEDAKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [410-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKQEIIKTTE QLIEAVNNGD FEAYAKICDP GLTSFEPEAL GNLVEGMDFH RFYFENLLAK  60
   61 NSKPIHTTIL NPHVHVIGED AACIAYIRLT QYIDGQGRPR TSQSEETRVW HRRDGKWQNV 120
  121 HFHCSGAPVA PLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits