YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55961897, gi\|...
Organism:	Homo sapiens
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55961897, gi|....

Description	E-value	Query Range	Subject Range
gi\|61354468 - gi\|61354468\|gb\|AAX41004.1\| calcium/calmodulin-dependent protein kinase II gamma [synthetic construct...	0.0	[1..527]	[1..527]
gi\|123983100, gi... - gi\|124000365\|gb\|ABM87691.1\| calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma [synth... gi\|21707842 - gi\|21707842\|gb\|AAH34044.1\| Calcium/calmodulin-dependent protein kinase II gamma [Homo sapiens]	0.0	[1..527]	[1..527]
gi\|73953045 - gi\|73953045\|ref\|XP_863906.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	0.0	[1..527]	[1..542]
gi\|109089281 - gi\|109089281\|ref\|XP_001099567.1\| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase t...	0.0	[1..527]	[1..527]
gi\|3241847, gi\|1... - gi\|3241847\|dbj\|BAA28869.1\| calmodulin-dependent protein kinase II-gamma dash2 [Oryctolagus cuniculus...	0.0	[1..527]	[1..518]
KCC2B_MOUSE, KCC... - (P28652) Calcium/calmodulin-dependent protein kinase type II beta chain (EC 2.7.1.123) (CaM-kinase I...	0.0	[1..527]	[1..542]

Back

Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTATCTRF TDDYQLFEEL GKGAFSVVRR CVKKTSTQEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIHQI 120
  121 LESVNHIHQH DIVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGEQQA WFGFAGTPGY 180
  181 LSPEVLRKDP YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITADQALKHP WVCQRSTVAS MMHRQETVEC LRKFNARRKL 300
  301 KGAILTTMLV SRNFSVGRQS SAPASPAASA AGLAGQAAKS LLNKKSDGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [350-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKKRKSSSSV HLMEPQTTVV HNATDGIKGS TESCNTTTED EDLKVRKQEI IKITEQLIEA  60
   61 INNGDFEAYT KICDPGLTSF EPEALGNLVE GMDFHKFYFE NLLSKNSKPI HTTILNPHVH 120
  121 VIGEDAACIA YIRLTQYIDG QGRPRTSQSE ETRVWHRRDG KWLNVHYHCS GAPAAPLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits