YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL54
Organism:	Homo sapiens
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL54.

Description	E-value	Query Range	Subject Range
gi\|114674655 - gi\|114674655\|ref\|XP_001135765.1\| PREDICTED: mitochondrial ribosomal protein L54 [Pan troglodytes]	2.0E-51	[1..138]	[1..138]
gi\|149034435, gi... - gi\|27717591\|ref\|XP_216854.1\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Rattus norve...	6.0E-51	[1..138]	[1..135]
RM54_MOUSE - 39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=1 SV=1	4.0E-44	[1..138]	[1..135]
RM54_BOVIN - 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54 PE=1 SV=1	3.0E-43	[1..138]	[1..138]
gi\|73987447 - gi\|73987447\|ref\|XP_542170.2\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Canis famili...	2.0E-40	[1..138]	[142..279]
gi\|29841257 - gi\|29841257\|gb\|AAP06289.1\| similar to GenBank Accession Number AE003452 CG9353 gene product in Droso...	2.0E-31	[30..133]	[13..111]
gi\|109122929 - gi\|109122929\|ref\|XP_001100840.1\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Macaca m...	4.0E-29	[1..95]	[1..95]
gi\|94732860 - gi\|94732860\|emb\|CAK11408.1\| novel protein similar to vertebrate mitochondrial ribosomal protein L54 ...	2.0E-27	[32..138]	[44..147]
RM37_SCHPO - 54S ribosomal protein L37, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mrpl37 - mitochondrial ribosomal protein subunit L37	1.0E-25	[30..134]	[40..138]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKRLFGAT RTWAGWGAWE LLNPATSGRL LARDYAKKPV MKGAKSGKGA VTSEALKDPD  60
   61 VCTDPVQLTT YAMGVNIYKE GQDVPLKPDA EYPEWLFEMN LGPPKTLEEL DPESREYWRR 120
  121 LRKQNIWRHN RLSKNKRL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.21467
Match:	PF08561.1
Description:	No description for PF08561.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits