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View Structure Prediction Details

Protein: MRPL9
Organism: Homo sapiens
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL9.

Description E-value Query
Range
Subject
Range
gi|114559523 - gi|114559523|ref|XP_513803.2| PREDICTED: mitochondrial ribosomal protein L9 isoform 3 [Pan troglodyt...
337.0 [0..1] [267..1]
MRPL9 - mitochondrial ribosomal protein L9
337.0 [0..1] [267..1]
gi|109016246 - gi|109016246|ref|XP_001108684.1| PREDICTED: similar to mitochondrial ribosomal protein L9 [Macaca mu...
327.0 [0..1] [267..1]
RM09_MOUSE - 39S ribosomal protein L9, mitochondrial OS=Mus musculus GN=Mrpl9 PE=1 SV=2
314.0 [0..1] [266..1]
RM09_RAT - 39S ribosomal protein L9, mitochondrial OS=Rattus norvegicus GN=Mrpl9 PE=2 SV=1
300.0 [0..1] [262..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVVTAPG RALLRAGAGR LLRGGVQELL RPRHEGNAPD LACNFSLSQN RGTVIVERWW  60
   61 KVPLAGEGRK PRLHRRHRVY KLVEDTKHRP KE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.523 d.93.1 SH2 domain
View Download 0.514 a.230.1 Description not found.
View Download 0.436 a.39.1 EF-hand
View Download 0.410 a.74.1 Cyclin-like
View Download 0.374 a.112.1 Description not found.
View Download 0.352 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.319 a.165.1 Myosin phosphatase inhibitor 17kDa protein, CPI-17
View Download 0.301 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View Download 0.278 a.74.1 Cyclin-like
View Download 0.261 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #2
Region A:
Residues: [93-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLELILTQSV ENVGVRGDLV SVKKSLGRNR LLPQGLAVYA SPENKKLFEE EKLLRQEGKL  60
   61 EKIQTKAGEA TVKFLKSCRL EVGMKNNVKW ELNPEIVARH FFKNLGVVVA PHTLKLPEEP 120
  121 ITRWGEYWCE VTVNGLDTVR VPMSVVNFEK PKTKRYKYWL AQQAAKAMAP TSPQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1p85F
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle