YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17572807, gi\|...
Organism:	Homo sapiens
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17572807, gi|....

Description	E-value	Query Range	Subject Range
ROPN1L - ropporin 1-like	381.0	[0..1]	[230..1]
gi\|114598972, gi... - gi\|55623918\|ref\|XP_517631.1\| PREDICTED: AKAP-associated sperm protein isoform 3 [Pan troglodytes], g...	380.0	[0..1]	[230..1]
ROP1L_MACFA - Ropporin-1-like protein OS=Macaca fascicularis GN=ROPN1L PE=2 SV=1	372.0	[0..1]	[230..1]
gi\|55930885, gi\|... - gi\|55930885\|gb\|AAH48680.1\| Ropporin 1-like [Mus musculus], gi\|38174583\|gb\|AAH60990.1\| Ropporin 1-lik...	347.0	[0..1]	[217..1]
gi\|109466262, gi... - gi\|109466262\|ref\|XP_001065890.1\| PREDICTED: similar to A-kinase anchoring protein-associated sperm p...	344.0	[0..1]	[216..143]
ROP1L_BOVIN - Ropporin-1-like protein OS=Bos taurus GN=ROPN1L PE=2 SV=1	341.0	[0..1]	[217..1]
gi\|74003076 - gi\|74003076\|ref\|XP_535790.2\| PREDICTED: similar to AKAP-associated sperm protein [Canis familiaris]	335.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPDTMFCA QQIHIPPELP DILKQFTKAA IRTQPADVLR WSAGYFSALS RGDPLPVKDR  60
   61 MEMPTATQKT DTGLTQGLLK VLHKQCHHKR YVELTDLEQK WKNLCLPKEK FKALLQLDPC 120
  121 ENKIKWINFL ALGCSML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSLNTALKH LCEILTDDPE GGPARIPFKT FSYVYRYLAR LDSDVSPLET ESYLASLKEN  60
   61 IDARKNGMIG LSDFFFPKRK LLESIENSED VGH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.916	a.39.1	EF-hand

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits