YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL15
Organism:	Homo sapiens
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL15.

Description	E-value	Query Range	Subject Range
gi\|61367624, gi\|... - gi\|61367624\|gb\|AAX43024.1\| ribosomal protein L15 [synthetic construct], gi\|54696210\|gb\|AAV38477.1\| r...	2.0E-96	[1..204]	[1..204]
gi\|61837947, gi\|... - gi\|76671813\|ref\|XP_870687.1\| PREDICTED: similar to ribosomal protein L15 isoform 2 [Bos taurus], gi\|...	2.0E-96	[1..204]	[1..204]
gi\|12006350 - gi\|12006350\|gb\|AAG44837.1\| 60S ribosomal protein L15 [Homo sapiens]	4.0E-96	[1..204]	[1..204]
gi\|12846287 - gi\|12846287\|dbj\|BAB27107.1\| unnamed protein product [Mus musculus]	5.0E-96	[1..204]	[1..204]
gi\|55729832 - gi\|55729832\|emb\|CAH91644.1\| hypothetical protein [Pongo abelii] gi\|55729832\|emb\|... - hypothetical protein [Pongo pygmaeus]	6.0E-96	[1..204]	[1..204]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYKYIQEL WRKKQSDVMR FLLRVRCWQY RQLSALHRAP RPTRPDKARR LGYKAKQGYV  60
   61 IYRIRVRRGG RKRPVPKGAT YGKPVHHGVN QLKFARSLQS VAEERAGRHC GALRVLNSYW 120
  121 VGEDSTYKFF EVILIDPFHK AIRRNPDTQW ITKPVHKHRE MRGLTSAGRK SRGLGKGHKF 180
  181 HHTIGGSRRA AWRRRNTLQL HRYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.30103
Match:	1s1iL
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits