YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPL7A
Organism: Homo sapiens
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL7A.

Description E-value Query
Range
Subject
Range
gi|114627384 - gi|114627384|ref|XP_001153928.1| PREDICTED: similar to L7a protein [Pan troglodytes]
0.0 [16..266] [128..378]
gi|94387458 - gi|94387458|ref|XP_992549.1| PREDICTED: similar to 60S ribosomal protein L7a (Surfeit locus protein ...
0.0 [2..266] [19..283]
gi|109050631 - gi|109050631|ref|XP_001082189.1| PREDICTED: similar to 60S ribosomal protein L7a [Macaca mulatta]
0.0 [1..266] [1..266]

Back

Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKGKKAKGK KVAPAPAVVK KQEAKKVVNP LFEKRPKNFG IGQDIQPKRD LTRFVKWPRY  60
   61 IRLQRQRAIL YKRLKVPPAI NQFTQALDRQ TATQLLKLAH KYRPE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.275 N/A N/A d.2.1 Lysozyme-like
View Download 0.201 N/A N/A a.28.1 ACP-like
View Download 0.247 N/A N/A a.165.1 Myosin phosphatase inhibitor 17kDa protein, CPI-17

Predicted Domain #2
Region A:
Residues: [106-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKQEKKQRLL ARAEKKAAGK GDVPTKRPPV LRAGVNTVTT LVENKKAQLV VIAHDVDPIE  60
   61 LVVFLPALCR KMGVPYCIIK GKARLGRLVH RKTCTTVAFT QVNSEDKGAL AKLVEAIRTN 120
  121 YNDRYDEIRR HWGGNVLGPK SVARIAKLEK AKAKELATKL G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.39794
Match: 1s1iG
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle