| Protein: | RFX1 |
| Organism: | Homo sapiens |
| Length: | 979 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFX1.
| Description | E-value | Query Range |
Subject Range |
|
|
714.0 | [0..280] | [979..3] |
|
|
684.0 | [0..1] | [979..1] |
|
|
684.0 | [0..1] | [979..1] |
|
|
684.0 | [0..240] | [977..2] |
|
|
683.0 | [0..94] | [979..87] |
|
|
681.0 | [0..240] | [977..2] |
|
|
680.0 | [0..240] | [977..2] |
|
Region A: Residues: [1-218] |
1 11 21 31 41 51
| | | | | |
1 MATQAYTELQ AAPPPSQPPQ APPQAQPQPP PPPPPAAPQP PQPPTAAATP QPQYVTELQS 60
61 PQPQAQPPGG QKQYVTELPA VPAPSQPTGA PTPSPAPQQY IVVTVSEGAM RASETVSEAS 120
121 PGSTASQTGV PTQVVQQVQG TQQRLLVQTS VQAKPGHVSP LQLTNIQVPQ QALPTQRLVV 180
181 QSAAPGSKGG QVSLTVHGTQ QVHSPPEQSP VQANSSSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [219-419] |
1 11 21 31 41 51
| | | | | |
1 KTAGAPTGTV PQQLQVHGVQ QSVPVTQERS VVQATPQAPK PGPVQPLTVQ GLQPVHVAQE 60
61 VQQLQQVPVP HVYSSQVQYV EGGDASYTAS AIRSSTYSYP ETPLYTQTAS TSYYEAAGTA 120
121 TQVSTPATSQ AVASSGSMPM YVSGSQVVAS STSTGAGASN SSGGGGSGGG GGGGGGGGGG 180
181 GSGSTGGGGS GAGTYVIQGG Y
|
| Detection Method: | |
| Confidence: | 108.677781 |
| Match: | PF04589.3 |
| Description: | No description for PF04589.3 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [420-563] |
1 11 21 31 41 51
| | | | | |
1 MLGSASQSYS HTTRASPATV QWLLDNYETA EGVSLPRSTL YCHYLLHCQE QKLEPVNAAS 60
61 FGKLIRSVFM GLRTRRLGTR GNSKYHYYGL RIKASSPLLR LMEDQQHMAM RGQPFSQKQR 120
121 LKPIQKMEGM TNGVAVGQQP STGL
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1dp7P |
| Description: | Class II MHC transcription factor RFX1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [564-671] |
1 11 21 31 41 51
| | | | | |
1 SDISAQVQQY QQFLDASRSL PDFTELDLQG KVLPEGVGPG DIKAFQVLYR EHCEAIVDVM 60
61 VNLQFTLVET LWKTFWRYNL SQPSEAPPLA VHDEAEKRLP KAILVLLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.701 | a.219.1 | Description not found. |
| View | Download | 0.625 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.579 | a.24.18 | Description not found. |
| View | Download | 0.563 | a.7.14 | Description not found. |
| View | Download | 0.544 | a.118.8 | TPR-like |
| View | Download | 0.496 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.436 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.416 | a.7.8 | GAT domain |
| View | Download | 0.404 | a.7.8 | GAT domain |
| View | Download | 0.396 | a.118.1 | ARM repeat |
|
Region A: Residues: [672-863] |
1 11 21 31 41 51
| | | | | |
1 KFEPVLQWTK HCDNVLYQGL VEILIPDVLR PIPSALTQAI RNFAKSLESW LTHAMVNIPE 60
61 EMLRVKVAAA GAFAQTLRRY TSLNHLAQAA RAVLQNTAQI NQMLSDLNRV DFANVQEQAS 120
121 WVCRCEDRVV QRLEQDFKVT LQQQNSLEQW AAWLDGVVSQ VLKPYQGSAG FPKAAKLFLL 180
181 KWSFYSSMVI RD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [864-979] |
1 11 21 31 41 51
| | | | | |
1 LTLRSAASFG SFHLIRLLYD EYMYYLIEHR VAQAKGETPI AVMGEFANLA TSLNPLDPDK 60
61 DEEEEEEEES EDELPQDISL AAGGESPALG PETLEPPAKL ARTDARGLFV QALPSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.497 | N/A | N/A | a.24.18 | Description not found. |
| View | Download | 0.368 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.367 | N/A | N/A | a.7.15 | Description not found. |
| View | Download | 0.365 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.357 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.339 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.312 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.296 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.292 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
