YRC Public Data Repository - Protein Structure Prediction

Protein:	ZNUC_ECOLI
Organism:	Escherichia coli
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZNUC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	309.0	[0..3]	[241..22]
CYSA_BACCR - Sulfate/thiosulfate import ATP-binding protein CysA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 /... gi\|228656892, gi... - gi\|229126503\|ref\|ZP_04255517.1\| Sulphate transport system permease protein 1 [Bacillus cereus BDRD-C...	308.0	[0..1]	[246..1]
gi\|89205648, gi\|... - gi\|89205648\|ref\|ZP_01184216.1\| Sulphate transport system permease protein 1 [Bacillus weihenstephane...	308.0	[0..1]	[246..1]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	307.0	[0..3]	[236..21]
gi\|196198805, gi... - gi\|196251865\|ref\|ZP_03150531.1\| sulfate ABC transporter, ATPase subunit [Clostridium thermocellum DS... gi\|48860137, gi\|... - gi\|67873780\|ref\|ZP_00503767.1\| ABC transporter [Clostridium thermocellum ATCC 27405], gi\|67851483\|gb...	307.0	[0..1]	[250..1]
gi\|89335149, gi\|... - gi\|89895701\|ref\|YP_519188.1\| hypothetical protein DSY2955 [Desulfitobacterium hafniense Y51], gi\|893...	307.0	[0..1]	[246..84]
CYSA_BACC1 - Sulfate/thiosulfate import ATP-binding protein CysA OS=Bacillus cereus (strain ATCC 10987 / NRS 248)...	306.0	[0..1]	[246..1]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	306.0	[0..5]	[238..4]
gi\|219670125, gi... - gi\|68208681\|ref\|ZP_00560779.1\| ABC transporter [Desulfitobacterium hafniense DCB-2], gi\|68167424\|gb\|...	305.0	[0..1]	[246..1]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	304.0	[0..3]	[230..8]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLVSLENV SVSFGQRRVL SDVSLELKPG KILTLLGPNG AGKSTLVRVV LGLVTPDEGV  60
   61 IKRNGKLRIG YVPQKLYLDT TLPLTVNRFL RLRPGTHKED ILPALKRVQA GHLINAPMQK 120
  121 LSGGETQRVL LARALLNRPQ LLVLDEPTQG VDVNGQVALY DLIDQLRREL DCGVLMVSHD 180
  181 LHLVMAKTDE VLCLNHHICC SGTPEVVSLH PEFISMFGPR GAEQLGIYRH HHNHRHDLQG 240
  241 RIVLRRGNDR S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.045757
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits