YRC Public Data Repository - Protein Structure Prediction

Protein:	Y3414_YERPE
Organism:	Yersinia pestis
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3414_YERPE.

Description	E-value	Query Range	Subject Range
gi\|22124685, gi\|... - gi\|22124685\|ref\|NP_668108.1\| hypothetical protein y0772 [Yersinia pestis KIM], gi\|21957498\|gb\|AAM843...	199.0	[0..1]	[119..32]
gi\|224582006, gi... - gi\|224582006\|ref\|YP_002635804.1\| hypothetical protein SPC_0173 [Salmonella enterica subsp. enterica ... gi\|62178730, gi\|... - gi\|62178730\|ref\|YP_215147.1\| hypothetical protein SC0160 [Salmonella enterica subsp. enterica serova...	188.0	[0..1]	[119..32]
gi\|77976068, gi\|... - gi\|77976068\|ref\|ZP_00831601.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia fred...	187.0	[0..1]	[118..1]
gi\|77962128, gi\|... - gi\|77962128\|ref\|ZP_00825953.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia moll...	185.0	[0..1]	[118..1]
gi\|77977271 - gi\|77977271\|ref\|ZP_00832724.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia inte...	185.0	[0..1]	[117..1]
gi\|77957553 - gi\|77957553\|ref\|ZP_00821606.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia berc...	185.0	[0..1]	[117..1]
gi\|75230519 - gi\|75230519\|ref\|ZP_00717000.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189218 - gi\|75189218\|ref\|ZP_00702485.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c...	180.0	[0..1]	[119..17]
YACL_SALPA - UPF0231 protein YacL OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yacL PE=3 SV=1 YACL_SALPK - UPF0231 protein YacL OS=Salmonella paratyphi A (strain AKU_12601) GN=yacL PE=3 SV=1 YACL_SALPA - UPF0231 protein yacL OS=Salmonella paratyphi A GN=yacL PE=3 SV=1	179.0	[0..1]	[119..1]
gi\|254037535, gi... - gi\|254037535\|ref\|ZP_04871612.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684064... gi\|237704275, gi... - gi\|237704275\|ref\|ZP_04534756.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|81244133, gi\|... - gi\|82542722\|ref\|YP_406669.1\| hypothetical protein SBO_0108 [Shigella boydii Sb227], gi\|81244133\|gb\|A... gi\|83569700 - gi\|83569700\|ref\|ZP_00921150.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|91070761, gi\|... - gi\|91209187\|ref\|YP_539173.1\| hypothetical protein UTI89_C0132 [Escherichia coli UTI89], gi\|91070761\|... gi\|75176532 - gi\|75176532\|ref\|ZP_00696669.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75194334 - gi\|75194334\|ref\|ZP_00704404.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75210446 - gi\|75210446\|ref\|ZP_00710597.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7], gi\|13359579\|db... gi\|75233846 - gi\|75233846\|ref\|ZP_00718316.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209746270, gi... - gi\|7449778\|pir\|\|G64734 yacL protein - Escherichia coli (strain K-12), gi\|25325229\|pir\|\|C85495 hypoth... gi\|75258888 - gi\|75258888\|ref\|ZP_00730278.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15799803, gi\|... - gi\|15799803\|ref\|NP_285815.1\| hypothetical protein Z0129 [Escherichia coli O157:H7 EDL933], gi\|125128... gi\|75511994 - gi\|75511994\|ref\|ZP_00734589.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|16128112, gi\|... - gb\|AAC73230.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|81239556, gi\|... - gi\|82775408\|ref\|YP_401754.1\| hypothetical protein SDY_0026 [Shigella dysenteriae Sd197], gi\|81239556...	179.0	[0..1]	[119..17]
YACL_SALTI - UPF0231 protein YacL OS=Salmonella typhi GN=yacL PE=3 SV=1 YACL_SALTI - UPF0231 protein yacL OS=Salmonella typhi GN=yacL PE=3 SV=1 gi\|29136330, gi\|... - gi\|29140706\|ref\|NP_804048.1\| hypothetical protein t0165 [Salmonella enterica subsp. enterica serovar... gi\|16759156 - gi\|16759156\|ref\|NP_454773.1\| hypothetical protein STY0182 [Salmonella enterica subsp. enterica serov... gi\|213580101 - gi\|213580101\|ref\|ZP_03361927.1\| hypothetical protein SentesTyph_02340 [Salmonella enterica subsp. en... gi\|213427407 - gi\|213427407\|ref\|ZP_03360157.1\| hypothetical protein SentesTyphi_18501 [Salmonella enterica subsp. e... gi\|213423415 - gi\|213423415\|ref\|ZP_03356402.1\| hypothetical protein Salmonentericaenterica_38537 [Salmonella enteri... gi\|213052577 - gi\|213052577\|ref\|ZP_03345455.1\| hypothetical protein Salmoneentericaenterica_06471 [Salmonella enter... gi\|214000732 - gi\|214000732\|ref\|ZP_03411467.1\| hypothetical protein Salmonellentericaenterica_09168 [Salmonella ent... gi\|213648056 - gi\|213648056\|ref\|ZP_03378109.1\| hypothetical protein SentesTy_12684 [Salmonella enterica subsp. ente...	179.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYEFLRDLT GQVLVKFSMG HEVIGHWLNE EIKGDLVKLD HIETAADGVR GSERQWQLPG  60
   61 HEYTLWLDGE EVMVRANQLD LDGDEMEEGM NYYDEESLCL CGLEDFLLVL KGYRAFITQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.130768
Match:	PF06062.2
Description:	No description for PF06062.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.607	N/A	N/A	d.224.1	SufE-like
View	Download	0.564	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.564	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.544	N/A	N/A	d.250.1	Description not found.
View	Download	0.492	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.492	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.418	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.370	N/A	N/A	d.228.1	Replication modulator SeqA, C-terminal DNA-binding domain
View	Download	0.363	N/A	N/A	d.198.1	Type III secretory system chaperone
View	Download	0.354	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.346	N/A	N/A	d.198.1	Type III secretory system chaperone
View	Download	0.315	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.262	N/A	N/A	b.1.1	Immunoglobulin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits