YRC Public Data Repository - Protein Structure Prediction

Protein:	YTFF_ECOLI
Organism:	Escherichia coli
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTFF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	156.0	[0..3]	[312..213]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	149.0	[0..20]	[312..420]
gi\|37528410, gi\|... - gi\|37528410\|ref\|NP_931755.1\| hypothetical protein plu4591 [Photorhabdus luminescens subsp. laumondii...	149.0	[0..8]	[324..17]
gi\|86162035, gi\|... - gi\|87122657\|ref\|ZP_01078533.1\| possible transporter, EamA family protein [Marinomonas sp. MED121], g...	143.0	[0..5]	[323..525]
gi\|28203124, gi\|... - gi\|28210686\|ref\|NP_781630.1\| membrane spanning protein [Clostridium tetani E88], gi\|28203124\|gb\|AAO3...	141.0	[0..1]	[323..1]
WTR16_ARATH - WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana GN=At3g02690 PE=2 SV=1	140.0	[0..8]	[312..125]
gi\|89084144, gi\|... - gi\|89101143\|ref\|ZP_01173977.1\| transporter, EamA family protein [Bacillus sp. NRRL B-14911], gi\|8908...	138.0	[0..2]	[318..25]
gi\|68555476, gi\|... - gi\|94309735\|ref\|YP_582945.1\| hypothetical protein Rmet_0790 [Ralstonia metallidurans CH34], gi\|93353...	138.0	[0..4]	[313..242]
gi\|31432828, gi\|... - gi\|37535652\|ref\|NP_922128.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31432828\|g...	135.0	[0..3]	[312..141]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVMISGVLY ALLAGLMWGL IFVGPLIVPE YPAMLQSMGR YLALGLIALP IAWLGRVRLR  60
   61 QLARRDWLTA LMLTMMGNLI YYFCLASAIQ RTGAPVSTMI IGTLPVVIPV FANLLYSQRD 120
  121 GKLAWGKLAP ALICIGIGLA CVNIAELNHG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.167491
Match:	PF00892.11
Description:	No description for PF00892.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDFDWARYT SGIVLALVSV VCWAWYALRN ARWLRENPDK HPMMWATAQA LVTLPVSLIG  60
   61 YLVACYWLNT QTPD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [225-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSLPFGPRPL VFISLMVAIA VLCSWVGALC WNVASQLLPT VILGPLIVFE TLAGLLYTFL  60
   61 LRQQMPPLMT LSGIALLVIG VVIAVRAKPE KPLTESVSES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.28
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits