YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2843_PHOLL, YS4...
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2843_PHOLL, YS4....

Description	E-value	Query Range	Subject Range
gi\|1788317, gi\|4... - gi\|49176178\|ref\|NP_416511.3\| hypothetical protein b2007 [Escherichia coli K12], gi\|1788317\|gb\|AAC750... gi\|30063449, gi\|... - gi\|30063449\|ref\|NP_837620.1\| hypothetical protein S2177 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|12516185, gi\|... - gi\|15802486\|ref\|NP_288512.1\| hypothetical protein Z3168 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7 str. Sakai] gi\|117624211, gi... - gi\|117624211\|ref\|YP_853124.1\| hypothetical protein APECO1_1105 [Escherichia coli APEC O1], gi\|115513... gi\|218699405, gi... - gi\|218699405\|ref\|YP_002407034.1\| hypothetical protein ECIAI39_1011 [Escherichia coli IAI39], gi\|2183... gi\|218352364, gi... - gi\|218695632\|ref\|YP_002403299.1\| hypothetical protein EC55989_2266 [Escherichia coli 55989], gi\|2183... gi\|74312549, gi\|... - gi\|74312549\|ref\|YP_310968.1\| hypothetical protein SSON_2077 [Shigella sonnei Ss046], gi\|73856026\|gb\|... gi\|218690069, gi... - gi\|218690069\|ref\|YP_002398281.1\| hypothetical protein ECED1_2358 [Escherichia coli ED1a], gi\|2184276... gi\|218365657, gi... - gi\|218558888\|ref\|YP_002391801.1\| hypothetical protein ECS88_2106 [Escherichia coli S88], gi\|21836565... gi\|89108827, gi\|... - gi\|89108827\|ref\|AP_002607.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|227835408, gi... - gi\|227887058\|ref\|ZP_04004863.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|91072869, gi\|... - gi\|91211295\|ref\|YP_541281.1\| hypothetical protein UTI89_C2282 [Escherichia coli UTI89], gi\|91072869\|... gi\|242377653, gi... - gi\|251785380\|ref\|YP_002999684.1\| hypothetical protein B21_01896 [Escherichia coli BL21], gi\|24237765... gi\|218432646, gi... - gi\|218705549\|ref\|YP_002413068.1\| hypothetical protein ECUMN_2353 [Escherichia coli UMN026], gi\|21843... gi\|237704465, gi... - gi\|237704465\|ref\|ZP_04534946.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254288784, gi... - gi\|254288784\|ref\|YP_003054532.1\| hypothetical protein ECD_01910 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973897, gi... - gi\|254161996\|ref\|YP_003045104.1\| hypothetical protein ECB_01910 [Escherichia coli B str. REL606], gi... gi\|218554569, gi... - gi\|218554569\|ref\|YP_002387482.1\| hypothetical protein ECIAI1_2077 [Escherichia coli IAI1], gi\|218361... gi\|170081637, gi... - gi\|170081637\|ref\|YP_001730957.1\| hypothetical protein ECDH10B_2154 [Escherichia coli str. K-12 subst... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7] gi\|209748274, gi... - gi\|92110362\|emb\|CAJ87631.1\| hypothetical protein [Escherichia coli], pir\|\|F64965 hypothetical protei... gi\|26248381, gi\|... - gi\|26248381\|ref\|NP_754421.1\| hypothetical protein c2534 [Escherichia coli CFT073], gi\|26108785\|gb\|AA... gi\|24052411, gi\|... - gi\|24113391\|ref\|NP_707901.1\| hypothetical protein SF2067 [Shigella flexneri 2a str. 301], gi\|2405241...	152.0	[0..4]	[105..25]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVNKPSFH NVLEFVRMFR RKNKLQREIA DNEKKIRDNQ KRVLLLDNLS EYIKPGMSIE  60
   61 DIQSIIMNMR SDYEDRIDDH IIKNADLSKE RRELSKKLKT MGELK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.366532
Match:	PF04363.3
Description:	No description for PF04363.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.645	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.604	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.580	N/A	N/A	a.112.1	Description not found.
View	Download	0.513	N/A	N/A	a.156.1	S13-like H2TH domain
View	Download	0.472	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits