YRC Public Data Repository - Protein Structure Prediction

Protein:	YRFC_ECOLI
Organism:	Escherichia coli
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRFC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83636656, gi\|... - gi\|83648613\|ref\|YP_437048.1\| Tfp pilus assembly protein PilN [Hahella chejuensis KCTC 2396], gi\|8363...	166.0	[0..2]	[177..1]
gi\|15836972, gi\|... - gi\|9105200\|gb\|AAF83180.1\|AE003888_13 fimbrial assembly membrane protein [Xylella fastidiosa 9a5c], g... gi\|11282614 - pir\|\|A82816 fimbrial assembly membrane protein XF0370 [imported] - Xylella fastidiosa (strain 9a5c)	164.0	[0..2]	[177..1]
gi\|88811947, gi\|... - gi\|88811947\|ref\|ZP_01127200.1\| fimbrial assembly membrane protein [Nitrococcus mobilis Nb-231], gi\|8...	163.0	[0..1]	[178..1]
gi\|71900201, gi\|... - gi\|71900201\|ref\|ZP_00682340.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71730034\|gb\|EAO32126...	163.0	[0..2]	[177..1]
gi\|182682305, gi... - gi\|182682305\|ref\|YP_001830465.1\| fimbrial assembly family protein [Xylella fastidiosa M23], gi\|18263... gi\|28199569, gi\|... - gi\|28199569\|ref\|NP_779883.1\| fimbrial assembly membrane protein [Xylella fastidiosa Temecula1], gi\|2...	163.0	[0..2]	[177..1]
gi\|71729133, gi\|... - gi\|71901090\|ref\|ZP_00683198.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71729133\|gb\|EAO31256... gi\|167965733, gi... - gi\|170730940\|ref\|YP_001776373.1\| fimbrial assembly membrane protein [Xylella fastidiosa M12], gi\|167... gi\|71276557, gi\|... - gi\|71276557\|ref\|ZP_00652831.1\| Fimbrial assembly [Xylella fastidiosa Dixon], gi\|71162628\|gb\|EAO12356...	163.0	[0..2]	[177..1]
gi\|53726588, gi\|... - gi\|53726588\|ref\|ZP_00347627.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa UCBP...	162.0	[0..2]	[176..1]
gi\|218774370, gi... - gi\|218894142\|ref\|YP_002443011.1\| type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa LES... gi\|530857, gi\|74... - pir\|\|S77727 type 4 fimbrial biogenesis protein PilN PA5043 [imported] - Pseudomonas aeruginosa (stra... gi\|15600236, gi\|... - gi\|9951333\|gb\|AAG08428.1\|AE004917_7 type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa ... gi\|107104143 - gi\|107104143\|ref\|ZP_01368061.1\| hypothetical protein PaerPA_01005216 [Pseudomonas aeruginosa PACS2] gi\|254244075, gi... - gi\|84323870\|ref\|ZP_00971937.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa 2192...	162.0	[0..2]	[176..1]
gi\|84317710, gi\|... - gi\|84317710\|ref\|ZP_00966148.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa C371...	160.0	[0..2]	[176..1]
gi\|94415414, gi\|... - gi\|94415414\|ref\|ZP_01295255.1\| hypothetical protein PaerP_01002782 [Pseudomonas aeruginosa PA7], gi\|...	160.0	[0..2]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPPINFLPW RQQRRTAFLR FWLLMFVAPL LLAVGITLIL RLTGSAEARI DAVLLQAEQQ  60
   61 LARSLQITKP RLLEQQQLRE QRSQRQRQRQ FTRDWQSALE ALAALLPEHA WLTTISWQQG 120
  121 TLEIKGLTTS ITALNALETS LRQDASFHLN QRGATQQDAQ GRWQFEYQLT RKVSDEHVL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.619789
Match:	PF05137.4
Description:	No description for PF05137.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.525	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.495	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.465	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.453	N/A	N/A	d.185.1	LuxS/MPP-like metallohydrolase
View	Download	0.449	N/A	N/A	d.74.5	Hypothetical protein Yml108w

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits