YRC Public Data Repository - Protein Structure Prediction

Protein:	YRFB_ECOLI
Organism:	Escherichia coli
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRFB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110616773, gi... - gi\|110807225\|ref\|YP_690745.1\| hypothetical protein SFV_3398 [Shigella flexneri 5 str. 8401], gi\|1106...	271.0	[0..1]	[146..1]
gi\|83571687 - gi\|83571687\|ref\|ZP_00923127.1\| hypothetical protein Sdys1_01000403 [Shigella dysenteriae 1012] gi\|187734030, gi... - gi\|75179989\|ref\|ZP_00699976.1\| hypothetical protein SboyB_01000317 [Shigella boydii BS512], gi\|18773... gi\|74313898, gi\|... - gi\|74313898\|ref\|YP_312317.1\| hypothetical protein SSON_3524 [Shigella sonnei Ss046], gi\|73857375\|gb\|... gi\|82545748, gi\|... - gi\|82545748\|ref\|YP_409695.1\| hypothetical protein SBO_3380 [Shigella boydii Sb227], gi\|81247159\|gb\|A...	271.0	[0..1]	[146..1]
gi\|30043586, gi\|... - gi\|30065324\|ref\|NP_839495.1\| hypothetical protein S4351 [Shigella flexneri 2a str. 2457T], gi\|300435...	270.0	[0..1]	[146..1]
gi\|190902063, gi... - gi\|75228953\|ref\|ZP_00715545.1\| hypothetical protein EcolB7_01002790 [Escherichia coli B7A], gi\|19116... gi\|157157911, gi... - gi\|75188167\|ref\|ZP_00701434.1\| hypothetical protein EcolE_01001411 [Escherichia coli E24377A], gi\|15... gi\|251786646, gi... - gi\|251786646\|ref\|YP_003000950.1\| hypothetical protein B21_03197 [Escherichia coli BL21], gi\|24237891... gi\|194435869, gi... - gi\|83588742\|ref\|ZP_00927366.1\| hypothetical protein Ecol1_01000375 [Escherichia coli 101-1], gi\|1944... gi\|254163321, gi... - gi\|254163321\|ref\|YP_003046429.1\| hypothetical protein ECB_03245 [Escherichia coli B str. REL606], gi... gi\|253979378, gi... - gi\|254290071\|ref\|YP_003055819.1\| hypothetical protein ECD_03245 [Escherichia coli BL21(DE3)], gi\|253...	270.0	[0..1]	[146..1]
gi\|188493595, gi... - gi\|75516139\|ref\|ZP_00738257.1\| hypothetical protein Ecol5_01000199 [Escherichia coli 53638], gi\|1884... gi\|193061920, gi... - gi\|75260318\|ref\|ZP_00731586.1\| hypothetical protein EcolE2_01000206 [Escherichia coli E22], gi\|19306... gi\|254038558, gi... - gi\|254038558\|ref\|ZP_04872614.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683906... gi\|192957893, gi... - gi\|75236994\|ref\|ZP_00721050.1\| hypothetical protein EcolE1_01001825 [Escherichia coli E110019], gi\|1... gi\|194426919, gi... - gi\|75211759\|ref\|ZP_00711823.1\| hypothetical protein EcolB_01001115 [Escherichia coli B171], gi\|19442... gi\|218362706, gi... - gi\|218555938\|ref\|YP_002388851.1\| hypothetical protein ECIAI1_3531 [Escherichia coli IAI1], gi\|218362... gi\|218697073, gi... - gi\|218697073\|ref\|YP_002404740.1\| hypothetical protein EC55989_3798 [Escherichia coli 55989], gi\|2183... gi\|209914104, gi... - gi\|209920845\|ref\|YP_002294929.1\| hypothetical protein ECSE_3654 [Escherichia coli SE11], gi\|20991410...	270.0	[0..1]	[146..1]
gi\|13363709, gi\|... - gi\|15833489\|ref\|NP_312262.1\| hypothetical protein ECs4235 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208738676, gi... - gi\|208818553\|ref\|ZP_03258873.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|13363709, gi\|... - gi\|15833489\|ref\|NP_312262.1\| hypothetical protein ECs4235 [Escherichia coli O157:H7], gi\|13363709\|db... gi\|168765737, gi... - gi\|189364731\|gb\|EDU83150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|209756624, gi... - pir\|\|A86004 hypothetical protein yrfB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189002369, gi... - gi\|189002369\|gb\|EDU71355.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|195934881 - gi\|195934881\|ref\|ZP_03080263.1\| hypothetical protein EscherichcoliO157_00225 [Escherichia coli O157:... gi\|15803896, gi\|... - gi\|15803896\|ref\|NP_289932.1\| hypothetical protein Z4747 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|208734389, gi... - gi\|208813112\|ref\|ZP_03254441.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|168747133, gi... - gi\|188018440\|gb\|EDU56562.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189358798, gi... - gi\|189358798\|gb\|EDU77217.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189369552, gi... - gi\|189369552\|gb\|EDU87968.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|254594707, gi... - gi\|254795307\|ref\|YP_003080144.1\| hypothetical protein ECSP_4342 [Escherichia coli O157:H7 str. TW143...	267.0	[0..1]	[146..1]
gi\|26249987, gi\|... - gi\|26249987\|ref\|NP_756027.1\| hypothetical protein c4163 [Escherichia coli CFT073], gi\|26110416\|gb\|AA... gi\|227839402, gi... - gi\|227883523\|ref\|ZP_04001328.1\| conserved membrane protein [Escherichia coli 83972], gi\|227839402\|gb...	267.0	[0..1]	[146..1]
gi\|124528166, gi... - gi\|124528166\|ref\|ZP_01699499.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500821\|gb... gi\|75197324, gi\|... - gi\|75197324\|ref\|ZP_00707394.1\| hypothetical protein EcolH_01003140 [Escherichia coli HS], gi\|1571628... gi\|170018371, gi... - gi\|170018371\|ref\|YP_001723325.1\| hypothetical protein EcolC_0320 [Escherichia coli ATCC 8739], gi\|16...	266.0	[0..1]	[146..1]
gi\|110643626, gi... - gi\|110643626\|ref\|YP_671356.1\| hypothetical protein ECP_3479 [Escherichia coli 536], gi\|110345218\|gb\|... gi\|190908137, gi... - gi\|75241517\|ref\|ZP_00725362.1\| hypothetical protein EcolF_01001523 [Escherichia coli F11], gi\|191171...	264.0	[0..1]	[146..1]
gi\|237703120, gi... - gi\|237703120\|ref\|ZP_04533601.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91074439, gi\|... - gi\|91212865\|ref\|YP_542851.1\| hypothetical protein UTI89_C3891 [Escherichia coli UTI89], gi\|91074439\|... gi\|115514784, gi... - gi\|117625660\|ref\|YP_858983.1\| hypothetical protein APECO1_3071 [Escherichia coli APEC O1], gi\|115514... gi\|218560450, gi... - gi\|218560450\|ref\|YP_002393363.1\| hypothetical protein ECS88_3778 [Escherichia coli S88], gi\|21836721... gi\|218429233, gi... - gi\|218691669\|ref\|YP_002399881.1\| hypothetical protein ECED1_4051 [Escherichia coli ED1a], gi\|2184292...	262.0	[0..1]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMFFDWWFA TSPRLRQLCW AFWLLMLVTL IFLSSTHHEE RDALIRLRAS HHQQWAALYR  60
   61 LVDTAPFSEE KTLPFSPLDF QLSGAQLVSW HPSAQGGELA LKTLWEAVPS AFTRLAERNV 120
  121 SVSRFSLSVE GDDLLFTLQL ETPHEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.807	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits