YRC Public Data Repository - Protein Structure Prediction

Protein:	YRDC_ECOLI
Organism:	Escherichia coli
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRDC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|20806674 - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB... gi\|20806674, gi\|... - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB...	241.0	[0..3]	[190..11]
gi\|241902915, gi... - gi\|241902915\|ref\|ZP_04787645.1\| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp... gi\|76588732, gi\|... - gi\|76795964\|ref\|ZP_00778334.1\| Sua5/YciO/YrdC/YwlC [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7...	239.0	[0..3]	[190..10]
gi\|114806420, gi... - gi\|167038769\|ref\|YP_001661754.1\| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514], g...	239.0	[0..3]	[190..10]
gi\|146296540, gi... - gi\|82501304\|ref\|ZP_00886656.1\| Sua5/YciO/YrdC/YwlC [Caldicellulosiruptor saccharolyticus DSM 8903], ...	237.0	[0..10]	[190..16]
gi\|18976678, gi\|... - gi\|18976678\|ref\|NP_578035.1\| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638], gi\|188...	236.0	[0..1]	[190..7]
gi\|106887631, gi... - gi\|160881865\|ref\|YP_001560833.1\| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans ISD...	236.0	[0..3]	[190..11]
gi\|91772214, gi\|... - gi\|91772214\|ref\|YP_564906.1\| translation factor SUA5 [Methanococcoides burtonii DSM 6242], gi\|917112...	235.0	[0..7]	[190..16]
gi\|42784497, gi\|... - gi\|42784497\|ref\|NP_981744.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987], gi\|427...	233.0	[0..10]	[190..21]
gi\|89095606, gi\|... - gi\|89095606\|ref\|ZP_01168500.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911], gi\|89...	233.0	[0..1]	[190..15]
gi\|7429862 - pir\|\|D71154 hypothetical protein PH0435 - Pyrococcus horikoshii gi\|3256838, gi\|1... - gi\|3256838\|dbj\|BAA29521.1\| 340aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590350\|...	232.0	[0..10]	[190..16]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNLQRDAI AAAIDVLNEE RVIAYPTEAV FGVGCDPDSE TAVMRLLELK QRPVDKGLIL  60
   61 IAANYEQLKP YIDDTMLTDV QRETIFSRWP GPVTFVFPAP ATTPRWLTGR FDSLAVRVTD 120
  121 HPLVVALCQA YGKPLVSTSA NLSGLPPCRT VDEVRAQFGA AFPVVPGETG GRLNPSEIRD 180
  181 ALTGELFRQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1hruA
Description:	Hypothetical protein YrdC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.410994327621936	bayes_pls_golite062009
catalytic activity	0.343636936190038	bayes_pls_golite062009
nucleic acid binding	0.280229875175501	bayes_pls_golite062009
RNA binding	0.119986061060909	bayes_pls_golite062009
protein binding	0.0580085924119811	bayes_pls_golite062009
DNA binding	0.0294511791688091	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: