YRC Public Data Repository - Protein Structure Prediction

Protein:	YRBB_ECOLI
Organism:	Escherichia coli
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRBB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15895575, gi\|... - gi\|15895575\|ref\|NP_348924.1\| anti-anti-sigma factor (antagonist of SpoIIAB) [Clostridium acetobutyli... gi\|25299040 - pir\|\|E97184 anti-anti-sigma factor (antagonist of SpoIIAB) [imported] - Clostridium acetobutylicum	93.0	[0..1]	[96..1]
gi\|220931544, gi... - gi\|89210648\|ref\|ZP_01189035.1\| Anti-sigma factor antagonist [Halothermothrix orenii H 168], gi\|89159...	92.0	[0..1]	[96..1]
gi\|111153440, gi... - gi\|111225908\|ref\|YP_716702.1\| anti-sigma-B factor antagonist (anti-anti-sigma-B factor) [Frankia aln...	92.0	[0..1]	[96..3]
gi\|86569839, gi\|... - gi\|86742977\|ref\|YP_483377.1\| anti-sigma-factor antagonist domain-containing protein [Frankia sp. CcI...	92.0	[0..1]	[96..3]
gi\|72163454, gi\|... - gi\|72163454\|ref\|YP_291111.1\| anti-sigma factor antagonist [Thermobifida fusca YX], gi\|71917186\|gb\|AA...	90.0	[0..1]	[96..38]
gi\|88931500, gi\|... - gi\|88931500\|ref\|ZP_01137194.1\| Anti-sigma factor antagonist [Acidothermus cellulolyticus 11B], gi\|88...	90.0	[0..1]	[96..3]
gi\|85858336, gi\|... - gi\|85858336\|ref\|YP_460538.1\| anti-sigma F factor antagonist [Syntrophus aciditrophicus SB], gi\|85721...	89.0	[0..1]	[96..84]
gi\|196199365, gi... - gi\|196251402\|ref\|ZP_03150072.1\| anti-sigma-factor antagonist [Clostridium thermocellum DSM 4150], gi... gi\|125972642, gi... - gi\|67874109\|ref\|ZP_00504014.1\| Anti-sigma factor antagonist [Clostridium thermocellum ATCC 27405], g...	89.0	[0..1]	[95..1]
SP2AA_BACME - Anti-sigma F factor antagonist OS=Bacillus megaterium GN=spoIIAA PE=3 SV=1	89.0	[0..1]	[95..3]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESLSWMQT GDTLALSGEL DQDVLLPLWE MREEAVKGIT CIDLSRVSRV DTGGLALLLH  60
   61 LIDLAKKQGN NVTLQGVNDK VYTLAKLYNL PADVLPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	1th8B
Description:	Crystal Structures of the ADP and ATP bound forms of the Bacillus Anti-sigma factor SpoIIAB in complex with the Anti-anti-sigma SpoIIAA: inhibitory complex with ADP, crystal form II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits