YRC Public Data Repository - Protein Structure Prediction

Protein:	YRAK_ECOLI
Organism:	Escherichia coli
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRAK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|606085 - gi\|606085\|gb\|AAA57948.1\| ORF_o429; overlaps o863, other starts possible [Escherichia coli] gi\|606085\|gb\|AAA... - ORF_o429; overlaps o863, other starts possible [Escherichia coli]	255.0	[0..1]	[360..67]
gi\|30064485, gi\|... - gi\|30064485\|ref\|NP_838656.1\| putative fimbrial protein [Shigella flexneri 2a str. 2457T], gi\|3004274... gi\|110616562, gi... - gi\|110807014\|ref\|YP_690534.1\| putative fimbrial protein [Shigella flexneri 5 str. 8401], gi\|11061656... gi\|56480271, gi\|... - gi\|56480271\|ref\|NP_708946.2\| putative fimbrial protein [Shigella flexneri 2a str. 301], gi\|56383822\|...	246.0	[0..1]	[360..1]
gi\|81242608, gi\|... - gi\|82778460\|ref\|YP_404809.1\| putative fimbrial protein [Shigella dysenteriae Sd197], gi\|81242608\|gb\|...	245.0	[0..1]	[360..1]
gi\|75197096 - gi\|75197096\|ref\|ZP_00707166.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli HS] gi\|194438831, gi... - gi\|83585786\|ref\|ZP_00924427.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli 101-1...	212.0	[0..40]	[360..2]
gi\|193061975, gi... - gi\|75260075\|ref\|ZP_00731353.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E22],... gi\|192959311, gi... - gi\|75239294\|ref\|ZP_00723265.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E1100... gi\|194427779, gi... - gi\|75211096\|ref\|ZP_00711209.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli B171]...	212.0	[0..40]	[360..2]
gi\|75187953 - gi\|75187953\|ref\|ZP_00701220.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli E2437...	211.0	[0..40]	[360..2]
gi\|73857159, gi\|... - gi\|74313682\|ref\|YP_312101.1\| putative fimbrial protein [Shigella sonnei Ss046], gi\|73857159\|gb\|AAZ89...	207.0	[0..48]	[360..2]
gi\|75228797 - gi\|75228797\|ref\|ZP_00715406.1\| COG3539: P pilus assembly protein, pilin FimA [Escherichia coli B7A]	197.0	[0..69]	[360..1]
gi\|4062509, gi\|8... - gi\|89107791\|ref\|AP_001571.1\| predicted fimbrial-like adhesin protein [Escherichia coli str. K-12 sub... EG13712 - putative fimbrial-like adhesin protein / FimA homolog, function unknown gi\|238862406, gi... - gi\|238900199\|ref\|YP_002925995.1\| putative fimbrial-like adhesin protein [Escherichia coli BW2952], g... gi\|254287863, gi... - gi\|254287863\|ref\|YP_003053611.1\| predicted fimbrial-like adhesin protein [Escherichia coli BL21(DE3)... gi\|251784483, gi... - gi\|251784483\|ref\|YP_002998787.1\| hypothetical protein B21_00952 [Escherichia coli BL21], gi\|24237675... YCBT_ECOLI - Hypothetical fimbrial-like protein ycbT precursor - Escherichia coli gi\|188487088, gi... - gi\|188491889\|ref\|ZP_02999159.1\| putative fimbrial protein [Escherichia coli 53638], gi\|188487088\|gb\|... gi\|253972956, gi... - gi\|254161055\|ref\|YP_003044163.1\| predicted fimbrial-like adhesin protein [Escherichia coli B str. RE... gi\|169888434, gi... - gi\|170080599\|ref\|YP_001729919.1\| fimbrial-like adhesin protein [Escherichia coli str. K-12 substr. D... EG13712 - putative fimbrial-like adhesin protein / FimA homolog, function unknown gi\|157160462, gi... - gi\|157160462\|ref\|YP_001457780.1\| putative fimbrial protein [Escherichia coli HS], gi\|157066142\|gb\|AB...	173.0	[0..5]	[362..15]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAPLITGL LLISTSCAYA SSGGCGADST SGATNYSSVV DDVTVNQTDN VTGREFTSAT  60
   61 LSSTNWQYAC SCSAGKAVKL VYMVSPVLTT TGHQTGYYKL NDSLDIKTTL QANDIPGLTT 120
  121 DQVVSVNTRF TQIKNNTVYS AATQTGVCQG DTSRYGPVNI GANTTFTLYV TKPFLGSMTI 180
  181 P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTDIAVIKGA WVDGMGSPST GDFHDLVKLS IQGNLTAPQS CKINQGDVIK VNFGFINGQK  60
   61 FTTRNAMPDG FTPVDFDITY DCGDTSKIKN SLQMRIDGTT GVVDQYNLVA RRRSSDNVPD 120
  121 VGIRIENLGG GVANIPFQNG ILPVDPSGHG TVNMRAWPVN LVGGELETGK FQGTATITVI 180
  181 VR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits