YRC Public Data Repository - Protein Structure Prediction

Protein:	YQGA_ECOLI
Organism:	Escherichia coli
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQGA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77638827, gi\|... - gi\|77685359\|ref\|ZP_00800761.1\| Protein of unknown function DUF554 [Alkaliphilus metalliredigenes QYM...	250.0	[0..2]	[234..34]
gi\|109640980, gi... - gi\|109647890\|ref\|ZP_01371793.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DCB...	246.0	[0..2]	[231..16]
gi\|62129259, gi\|... - gi\|62181626\|ref\|YP_218043.1\| hypothetical protein SC3056 [Salmonella enterica subsp. enterica serova...	243.0	[0..1]	[235..1]
gi\|224584911, gi... - gi\|224584911\|ref\|YP_002638710.1\| hypothetical protein SPC_3183 [Salmonella enterica subsp. enterica ... gi\|56129310, gi\|... - gi\|56415053\|ref\|YP_152128.1\| hypothetical protein SPA2978 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yqgA] [protein=putative inner membrane protein] [protein_id=YP_005239265.1] [location=3293586.... gi\|167990354, gi... - gi\|205331062\|gb\|EDZ17826.1\| YqgA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... gi\|205333749, gi... - gi\|205333749\|gb\|EDZ20513.1\| YqgA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]... gi\|168242923, gi... - gi\|205337727\|gb\|EDZ24491.1\| YqgA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]... gi\|205346828, gi... - gi\|205346828\|gb\|EDZ33459.1\| YqgA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066],... gi\|161365448, gi... - gi\|161616084\|ref\|YP_001590049.1\| hypothetical protein SPAB_03885 [Salmonella enterica subsp. enteric... gi\|238909914 - gi\|238909914\|ref\|ZP_04653751.1\| hypothetical protein SentesTe_02100 [Salmonella enterica subsp. ente... gi\|213162843 - gi\|213162843\|ref\|ZP_03348553.1\| hypothetical protein Salmoneentericaenterica_23554 [Salmonella enter... gi\|213425499 - gi\|213425499\|ref\|ZP_03358249.1\| hypothetical protein SentesTyphi_07407 [Salmonella enterica subsp. e... gi\|213646182 - gi\|213646182\|ref\|ZP_03376235.1\| hypothetical protein SentesTy_01813 [Salmonella enterica subsp. ente... gi\|214000583 - gi\|214000583\|ref\|ZP_03411318.1\| hypothetical protein Salmonellentericaenterica_08211 [Salmonella ent... gi\|197936517, gi... - gi\|198242001\|ref\|YP_002217092.1\| YqgA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02... gi\|199604653, gi... - gi\|200387555\|ref\|ZP_03214167.1\| YqgA [Salmonella enterica subsp. enterica serovar Virchow str. SL491... gi\|204322318, gi... - gi\|204927996\|ref\|ZP_03219196.1\| YqgA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM... gi\|206710178, gi... - gi\|207858375\|ref\|YP_002245026.1\| hypothetical protein SEN2959 [Salmonella enterica subsp. enterica s... gi\|194459351, gi... - gi\|194472987\|ref\|ZP_03078971.1\| YqgA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... gi\|197214490, gi... - gi\|197250787\|ref\|YP_002148031.1\| YqgA [Salmonella enterica subsp. enterica serovar Agona str. SL483]... gi\|197264210, gi... - gi\|197264210\|ref\|ZP_03164284.1\| YqgA [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|197095459, gi... - gi\|197363982\|ref\|YP_002143619.1\| hypothetical protein SSPA2777 [Salmonella enterica subsp. enterica ... gi\|29139011, gi\|... - gi\|29143377\|ref\|NP_806719.1\| hypothetical protein t3028 [Salmonella enterica subsp. enterica serovar... gi\|168463694, gi... - gi\|195633509\|gb\|EDX51923.1\| YqgA [Salmonella enterica subsp. enterica serovar Newport str. SL317], g... gi\|16761890 - gi\|16761890\|ref\|NP_457507.1\| hypothetical protein STY3272 [Salmonella enterica subsp. enterica serov... gi\|205343511, gi... - gi\|205343511\|gb\|EDZ30275.1\| YqgA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N0... gi\|16504192, gi\|... - gi\|25328209\|pir\|\|AD0880 probable membrane protein yqgA [imported] - Salmonella enterica subsp. enter... gi\|194403017, gi... - gi\|194444354\|ref\|YP_002042377.1\| YqgA [Salmonella enterica subsp. enterica serovar Newport str. SL25... gi\|16766416, gi\|... - gi\|16766416\|ref\|NP_462031.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164216... gi\|194408253, gi... - gi\|194449949\|ref\|YP_002047106.1\| YqgA [Salmonella enterica subsp. enterica serovar Heidelberg str. S...	243.0	[0..1]	[235..1]
gi\|48826279 - ref\|ZP_00287501.1\| COG1811: Uncharacterized membrane protein, possible Na+ channel or pump [Enteroco... gi\|68196393, gi\|... - gi\|69244452\|ref\|ZP_00602868.1\| Protein of unknown function DUF554 [Enterococcus faecium DO], gi\|6819...	240.0	[0..1]	[234..1]
gi\|219670945, gi... - gi\|219670945\|ref\|YP_002461380.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DC... gi\|89897796, gi\|... - gi\|89897796\|ref\|YP_521283.1\| hypothetical protein DSY5050 [Desulfitobacterium hafniense Y51], gi\|893...	235.0	[0..2]	[231..1]
gi\|241902671, gi... - gi\|241902671\|ref\|ZP_04787403.1\| protein of unknown function DUF554 [Thermoanaerobacter brockii subsp... gi\|76796695, gi\|... - gi\|76796695\|ref\|ZP_00779050.1\| Protein of unknown function DUF554 [Thermoanaerobacter ethanolicus AT...	232.0	[0..2]	[224..1]
gi\|126097005, gi... - gi\|126208213\|ref\|YP_001053438.1\| hypothetical protein APL_0733 [Actinobacillus pleuropneumoniae L20]... gi\|32035543 - gi\|32035543\|ref\|ZP_00135481.1\| COG1811: Uncharacterized membrane protein, possible Na+ channel or pu...	230.0	[0..1]	[235..1]
gi\|88946534, gi\|... - gi\|88946534\|ref\|ZP_01149610.1\| uncharacterized membrane protein, possible Na+ channel or pump [Desul...	228.0	[0..2]	[232..1]
gi\|150841384, gi... - gi\|75433942\|ref\|ZP_00733169.1\| uncharacterized membrane protein, possible Na+ channel or pump [Actin...	226.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGPFINAS AVLLGGVLGA LLSQRLPERI RVSMTSIFGL ASLGIGILLV VKCANLPAMV  60
   61 LATLLGALIG EICLLEKGVN TAVAKAQNLF RHSRKKPAHE SFIQNYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIIVLFCASG TGIFGAMNEG MTGDPSILIA KSFLDFFTAM IFACSLGIAV SVISIPLLII  60
   61 QLTLAWAAAL ILPLTTPSMM ADFSAVGGLL LLATGLRICG IKMFPVVNML PALLLAMPLS 120
  121 AAWTAWFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits