YRC Public Data Repository - Protein Structure Prediction

Protein:	YQAA_ECOLI
Organism:	Escherichia coli
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90418226, gi\|... - gi\|90418226\|ref\|ZP_01226138.1\| DedA [Aurantimonas sp. SI85-9A1], gi\|90337898\|gb\|EAS51549.1\| DedA [Au... gi\|90418226, gi\|... - gi\|90418226\|ref\|ZP_01226138.1\| DedA [Aurantimonas sp. SI85-9A1], gi\|90337898\|gb\|EAS51549.1\| DedA [Au...	124.0	[0..1]	[142..8]
gi\|94984203, gi\|... - gi\|94984203\|ref\|YP_603567.1\| DedA family protein [Deinococcus geothermalis DSM 11300], gi\|94554484\|g...	122.0	[0..1]	[141..8]
gi\|114537537, gi... - gi\|114706987\|ref\|ZP_01439886.1\| hypothetical protein FP2506_03009 [Fulvimarina pelagi HTCC2506], gi\|...	121.0	[0..1]	[142..30]
gi\|4808350, gi\|2... - gi\|4808350\|emb\|CAB42764.1\| possible membrane protein [Streptomyces coelicolor A3(2)], gi\|21221838\|re... gi\|7481018 - pir\|\|T36337 probable membrane protein - Streptomyces coelicolor	118.0	[0..1]	[139..16]
gi\|58254560, gi\|... - gi\|58337243\|ref\|YP_193828.1\| alkaline phosphatase [Lactobacillus acidophilus NCFM], gi\|58254560\|gb\|A...	117.0	[0..1]	[142..8]
gi\|25027480, gi\|... - gi\|25027480\|ref\|NP_737534.1\| hypothetical protein CE0924 [Corynebacterium efficiens YS-314], gi\|2349...	117.0	[0..2]	[142..10]
gi\|23466337, gi\|... - gi\|23466337\|ref\|NP_696940.1\| hypothetical protein BL1793 [Bifidobacterium longum NCC2705], gi\|233270... gi\|46190952, gi\|... - gi\|46190952\|ref\|ZP_00120738.2\| COG0586: Uncharacterized membrane-associated protein [Bifidobacterium...	116.0	[0..1]	[141..33]
gi\|146297376, gi... - gi\|82500614\|ref\|ZP_00886020.1\| uncharacterized membrane-associated protein, DedA family [Caldicellul...	115.0	[0..2]	[141..15]
gi\|48847225, gi\|... - gi\|78221723\|ref\|YP_383470.1\| hypothetical protein Gmet_0502 [Geobacter metallireducens GS-15], gi\|78...	115.0	[0..2]	[142..12]
gi\|53762885, gi\|... - gi\|81299430\|ref\|YP_399638.1\| hypothetical protein Synpcc7942_0619 [Synechococcus elongatus PCC 7942]... gi\|56750914, gi\|... - gi\|56750914\|ref\|YP_171615.1\| hypothetical protein syc0905_c [Synechococcus elongatus PCC 6301], gi\|5...	115.0	[0..2]	[141..9]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEALSLFSL FASSFLSATL LPGNSEVVLV AMLLSGISHP WVLVLTATMG NSLGGLTNVI  60
   61 LGRFFPLRKT SRWQEKATGW LKRYGAVTLL LSWMPVVGDL LCLLAGWMRI SWGPVIFFLC 120
  121 LGKALRYVAV AAATVQGMMW WH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits