YRC Public Data Repository - Protein Structure Prediction

Protein:	YPEL1_MOUSE
Organism:	Mus musculus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPEL1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114685320 - gi\|114685320\|ref\|XP_001159736.1\| PREDICTED: hypothetical protein [Pan troglodytes]	232.0	[0..1]	[118..247]
gi\|109462885 - gi\|109462885\|ref\|XP_001080016.1\| PREDICTED: similar to yippee-like 3 [Rattus norvegicus]	227.0	[0..1]	[118..159]
gi\|112180619 - gi\|112180619\|gb\|AAH09171.4\| Ypel3 protein [Mus musculus]	224.0	[0..1]	[118..57]
gi\|40255199, gi\|... - gi\|40255199\|ref\|NP_113665.2\| yippee-like 3 [Homo sapiens], gi\|30047791\|gb\|AAH50664.1\| Yippee-like 3 ...	223.0	[0..1]	[118..83]
gi\|194043377 - gi\|194043377\|ref\|XP_001929563.1\| PREDICTED: similar to Protein yippee-like 1 [Sus scrofa] gi\|151554819, gi... - gi\|76639768\|ref\|XP_599673.2\| PREDICTED: hypothetical protein [Bos taurus], gi\|154152089\|ref\|NP_00109... tr\|M3X481\|M3X481... - Protein yippee-like OS=Felis catus GN=YPEL1 PE=3 SV=1 gi\|73996029 - gi\|73996029\|ref\|XP_850836.1\| PREDICTED: similar to Yippee-like protein 1 [Canis familiaris]	213.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMTKSKTF QAYLPHCHRT YSCIHCRAHL ANHDELISKS FQGSQGRAYL FNSVVNVGCG  60
   61 PAEERVLLTG LHAVADIYCE NCKTTLGWKY EHAFESSQKY KEGKFIIELA HMIKDNGW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.98
Match:	1zu1A
Description:	Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.71755880039503	bayes_pls_golite062009
nucleic acid binding	0.0828253815733649	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: