YRC Public Data Repository - Protein Structure Prediction

Protein:	YPJJ_ECOLI
Organism:	Escherichia coli
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPJJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|170521888, gi... - gi\|170684170\|ref\|YP_001745193.1\| hypothetical protein EcSMS35_3210 [Escherichia coli SMS-3-5], gi\|17... gi\|13236681 - gi\|13236681\|gb\|AAK16199.1\| YeeT [Escherichia coli]	123.0	[0..1]	[60..1]
gi\|91210174, gi\|... - gi\|91210174\|ref\|YP_540160.1\| hypothetical protein UTI89_C1146 [Escherichia coli UTI89], gi\|91071748\|... gi\|26106574, gi\|... - gi\|26246177\|ref\|NP_752216.1\| hypothetical protein c0272 [Escherichia coli CFT073], gi\|26106574\|gb\|AA... gi\|18265871 - gi\|18265871\|gb\|AAL67344.1\|AF447814_12 intergenic-region protein [Escherichia coli] gi\|218706554, gi... - gi\|218706554\|ref\|YP_002414073.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli U...	123.0	[0..1]	[60..1]
gi\|218372473, gi... - gi\|218702487\|ref\|YP_002410116.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli I... gi\|23954300 - gi\|23954300\|emb\|CAD42099.1\| hypothetical protein [Escherichia coli] gi\|24114261, gi\|... - gi\|24114261\|ref\|NP_708771.1\| hypothetical protein SF2997 [Shigella flexneri 2a str. 301], gi\|2405341... gi\|30064314, gi\|... - gi\|30064314\|ref\|NP_838485.1\| hypothetical protein S3202 [Shigella flexneri 2a str. 2457T], gi\|300425... gi\|91075517, gi\|... - gi\|91213943\|ref\|YP_543929.1\| hypothetical protein UTI89_C4995 [Escherichia coli UTI89], gi\|91075517\|... gi\|110346331, gi... - gi\|110644739\|ref\|YP_672469.1\| hypothetical protein ECP_4632 [Escherichia coli 536], gi\|110346331\|gb\|... gi\|190909037, gi... - gi\|75242262\|ref\|ZP_00726024.1\| hypothetical protein EcolF_01000717 [Escherichia coli F11], gi\|191170... gi\|170518463, gi... - gi\|170680745\|ref\|YP_001746719.1\| hypothetical protein EcSMS35_4805 [Escherichia coli SMS-3-5], gi\|17... gi\|75187725, gi\|... - gi\|75187725\|ref\|ZP_00700992.1\| hypothetical protein EcolE_01000962 [Escherichia coli E24377A], gi\|15... gi\|218430098, gi... - gi\|218692534\|ref\|YP_002400746.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli E... gi\|218354815, gi... - gi\|218698083\|ref\|YP_002405750.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli 5... gi\|227837808, gi... - gi\|227885219\|ref\|ZP_04003024.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783780...	122.0	[0..1]	[60..1]
gi\|218695628, gi... - gi\|218695628\|ref\|YP_002403295.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli 5... gi\|218427630, gi... - gi\|218690066\|ref\|YP_002398278.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli E... gi\|218699407, gi... - gi\|218699407\|ref\|YP_002407036.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli I... gi\|89108822, gi\|... - gi\|89108822\|ref\|AP_002602.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|195939517 - gi\|195939517\|ref\|ZP_03084899.1\| CP4-44 prophage; protein [Escherichia coli O157:H7 str. EC4024] gi\|188495457, gi... - gi\|75514044\|ref\|ZP_00736374.1\| hypothetical protein Ecol5_01001868 [Escherichia coli 53638], gi\|1884... gi\|169889467, gi... - gi\|170081632\|ref\|YP_001730952.1\| CP4-44 prophage; protein [Escherichia coli str. K-12 substr. DH10B]... gi\|193062139, gi... - gi\|75259875\|ref\|ZP_00731153.1\| hypothetical protein EcolE2_01000271 [Escherichia coli E22], gi\|75259... gi\|208731344, gi... - gi\|208817001\|ref\|ZP_03258121.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|75235973, gi\|... - gi\|75235973\|ref\|ZP_00720110.1\| hypothetical protein EcolE1_01002488 [Escherichia coli E110019], gi\|1... gi\|208810267, gi... - gi\|208810267\|ref\|ZP_03252143.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|187733269, gi... - gi\|75177224\|ref\|ZP_00697322.1\| hypothetical protein SboyB_01002925 [Shigella boydii BS512], gi\|18773... gi\|209159631, gi... - gi\|209398231\|ref\|YP_002271175.1\| hypothetical protein ECH74115_2856 [Escherichia coli O157:H7 str. E... gi\|208820503, gi... - gi\|208820503\|ref\|ZP_03260823.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|218365653, gi... - gi\|218558884\|ref\|YP_002391797.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli S... gi\|217317411, gi... - gi\|217329643\|ref\|ZP_03445722.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|15802481, gi\|... - gi\|15802481\|ref\|NP_288507.1\| hypothetical protein Z3163 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|283788470\|ref... - hypothetical protein ROD_49691 [Citrobacter rodentium ICC168] EG13387 - CP4-44 prophage; uncharacterized protein / Function unknown, CP4-44 putative defective prophage YEET_ECOL6 - Uncharacterized protein YeeT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yeeT ... EG13387 - CP4-44 prophage; uncharacterized protein / Function unknown, CP4-44 putative defective prophage gi\|91211290, gi\|... - gi\|91211290\|ref\|YP_541276.1\| hypothetical protein UTI89_C2277 [Escherichia coli UTI89], gi\|91072864\|... gi\|168758440, gi... - gi\|189354740\|gb\|EDU73159.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... YEET_ECOLI - Hypothetical protein yeeT - Escherichia coli gi\|13362272, gi\|... - gi\|15832058\|ref\|NP_310831.1\| hypothetical protein ECs2804 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168751565, gi... - gi\|188014402\|gb\|EDU52524.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|110343808, gi... - gi\|110643999\|ref\|YP_671729.1\| hypothetical protein ECP_3857 [Escherichia coli 536], gi\|110642216\|ref... gi\|189360749, gi... - gi\|189360749\|gb\|EDU79168.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168764087, gi... - gi\|189365861\|gb\|EDU84277.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168784000, gi... - gi\|188998748\|gb\|EDU67734.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767581, gi... - gi\|187767581\|gb\|EDU31425.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... YEET_ECOL6 - Uncharacterized protein yeeT OS=Escherichia coli O6 GN=yeeT PE=3 SV=1 gi\|168801967, gi... - gi\|189375959\|gb\|EDU94375.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... YEET_ECO57 - Uncharacterized protein YeeT OS=Escherichia coli O157:H7 GN=yeeT PE=3 SV=1 gi\|189371213, gi... - gi\|189371213\|gb\|EDU89629.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|227887053, gi... - gi\|227887053\|ref\|ZP_04004858.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|237704008, gi... - gi\|237704460\|ref\|ZP_04534941.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|23770... gi\|238901194, gi... - gi\|238901194\|ref\|YP_002926990.1\| CP4-44 prophage; hypothetical protein [Escherichia coli BW2952], gi... gi\|254793711, gi... - gi\|254793711\|ref\|YP_003078548.1\| CP4-44 prophage; predicted protein [Escherichia coli O157:H7 str. T... gi\|226237409 - gi\|226237409\|dbj\|BAH46931.1\| predicted protein [Escherichia coli O55:H7]	122.0	[0..1]	[60..1]
gi\|28316259 - gi\|28316259\|emb\|CAD66204.1\| hypothetical protein [Escherichia coli] gi\|110342133, gi... - gi\|110640541\|ref\|YP_668269.1\| hypothetical protein ECP_0336 [Escherichia coli 536], gi\|110342133\|gb\|... gi\|190908460, gi... - gi\|75241921\|ref\|ZP_00725740.1\| hypothetical protein EcolF_01001286 [Escherichia coli F11], gi\|191171...	122.0	[0..1]	[60..1]
gi\|75212394, gi\|... - gi\|75212394\|ref\|ZP_00712418.1\| hypothetical protein EcolB_01000478 [Escherichia coli B171], gi\|75212... gi\|195183363, gi... - gi\|195183363\|dbj\|BAG66900.1\| predicted protein [Escherichia coli O111:H-], gi\|195183283\|dbj\|BAG66822... gi\|75229699, gi\|... - gi\|75229699\|ref\|ZP_00716232.1\| hypothetical protein EcolB7_01002071 [Escherichia coli B7A], gi\|19116... gi\|75189024, gi\|... - gi\|75189024\|ref\|ZP_00702291.1\| hypothetical protein EcolE_01002302 [Escherichia coli E24377A], gi\|15... gi\|218435044, gi... - gi\|218707947\|ref\|YP_002415466.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli U... gi\|192931327, gi... - gi\|75259060\|ref\|ZP_00730428.1\| hypothetical protein EcolE2_01001324 [Escherichia coli E22], gi\|19306... gi\|82779593, gi\|... - gi\|82779593\|ref\|YP_405942.1\| hypothetical protein SDY_4591 [Shigella dysenteriae Sd197], gi\|81243741... gi\|254692434 - gi\|254692434\|emb\|CAR48077.1\| hypothetical protein [Escherichia coli]	121.0	[0..1]	[60..1]

Back

Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIISKRRAM TIYRQHPESR IFRYCTGKYQ WHGSVCHYTG RDVPDITGVL AVYAERRRTA  60
   61 ADRMLD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.091515
Match:	PF06174.2
Description:	No description for PF06174.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits