YRC Public Data Repository - Protein Structure Prediction

Protein:	YPFI_ECOLI
Organism:	Escherichia coli
Length:	671 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPFI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|61098422, gi\|... - gi\|61098422\|ref\|NP_001012958.1\| N-acetyltransferase 10 [Gallus gallus], gi\|53133462\|emb\|CAG32060.1\| ...	779.0	[0..3]	[668..6]
gi\|76636220 - gi\|76636220\|ref\|XP_592935.2\| PREDICTED: similar to N-acetyltransferase-like protein isoform 1 [Bos t...	774.0	[0..3]	[668..6]
gi\|113197860, gi... - gi\|157422806\|gb\|AAI53327.1\| Nat10 protein [Xenopus tropicalis], gi\|113197860\|gb\|AAI21295.1\| Nat10 pr...	773.0	[0..3]	[664..6]
gi\|73982171 - gi\|73982171\|ref\|XP_857864.1\| PREDICTED: similar to N-acetyltransferase-like protein isoform 8 [Canis...	765.0	[0..3]	[668..6]
gi\|12697963 - gi\|12697963\|dbj\|BAB21800.1\| KIAA1709 protein [Homo sapiens]	762.0	[0..3]	[668..9]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELTALHTL TAQMKREGIR RLLVLSGEEG WCFEHTLKLR DALPGDWLWI SPRPDAENHC  60
   61 SPSALQTLLG REFRHAVFDA RHGFDAAAFA ALSGTLKAGS WLVLLLPVWE EWENQPDADS 120
  121 LRWSDCPDPI ATPHFVQHLK RVLTADNEAI LWRQNQPFSL AHFTPRTDWY PATGAPQPEQ 180
  181 QQLLKQLMTM PPGVAAVTAA RGRGKSALAG QLISRIAGRA IVTAPAKAST DVLAQFAGEK 240
  241 FRFIAPDALL ASDEQADWLV VDEAAAIPAP LLHQLVSRFP RTLLTTTVQG YEGTGRGFLL 300
  301 KFCARFPHLH RFELQQPIRW AQGCPLEKMV SEALVFDDEN FTHTPQG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.11
Match:	1w36D
Description:	RecBCD:DNA complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [348-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVISAFEQT LWQSDPETPL KVYQLLSGAH YRTSPLDLRR MMDAPGQHFL QAAGENEIAG  60
   61 ALWLVDEGGL SQQLSQAVWA GFRRPRGNLV AQSLAAHGNN PLAATLRGRR VSRIAVHPAR 120
  121 QREGTGRQLI AGALQYTQDL DYLSVSFGYT GELWRFWQRC GFVLVRMGNH REASSGCYTA 180
  181 MALLPM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	2qecA
Description:	No description for 2qecA was found.

Predicted Domain #3

Region A:
Residues: [534-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDAGKQLAER EHYRLRRDAQ ALAQWNGETL PVDPLNDAVL SDDDWLELAG FAFAHRPLLT  60
   61 SLGCLLRLLQ TSELALPALR GRLQKNASDA QLCTTLKLSG RKMLLVRQRE EAAQALFALN 120
  121 DVRTERLRDR ITQWQLFH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits