YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2560_VIBVY
Organism:	Vibrio vulnificus YJ016
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2560_VIBVY.

Description	E-value	Query Range	Subject Range
gi\|165939851, gi... - gi\|89105130\|ref\|ZP_01177655.1\| COG1196: Chromosome segregation ATPases [Yersinia pestis biovar Orien... Y514_YERPA - UPF0325 protein YPA_0514 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0514 PE=3 SV=1 Y3439_YERPG - UPF0325 protein YpAngola_A3439 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3439 PE=3... Y2962_YERPN - UPF0325 protein YPN_2962 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2962 PE=3 SV=1 Y1009_YERP3 - UPF0325 protein YpsIP31758_1009 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|45442579, gi\|... - gi\|45442579\|ref\|NP_994118.1\| hypothetical protein YP_2811 [Yersinia pestis biovar Microtus str. 9100... gi\|22127017, gi\|... - gi\|22127017\|ref\|NP_670440.1\| hypothetical protein y3141 [Yersinia pestis KIM], gi\|21960064\|gb\|AAM866... gi\|115346819, gi... - gi\|218928208\|ref\|YP_002346083.1\| hypothetical protein YPO1040 [Yersinia pestis CO92], gi\|16121340\|re... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3007 PE=3... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis GN=YPTB3007 PE=3 SV=1 gi\|149366959, gi... - gi\|149366959\|ref\|ZP_01888992.1\| hypothetical protein YPE_2223 [Yersinia pestis CA88-4125], gi\|149290... Y1673_YERPP - UPF0325 protein YPDSF_1673 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1673 PE=3 SV=1 gi\|165920982, gi... - gi\|165927086\|ref\|ZP_02222918.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166207410, gi... - gi\|166211639\|ref\|ZP_02237674.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011905, gi... - gi\|166011905\|ref\|ZP_02232803.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419810, gi... - gi\|167419810\|ref\|ZP_02311563.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167400075, gi... - gi\|167400075\|ref\|ZP_02305593.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468858 - gi\|167468858\|ref\|ZP_02333562.1\| hypothetical protein YpesF_13399 [Yersinia pestis FV-1] gi\|167425350, gi... - gi\|167425350\|ref\|ZP_02317103.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229837747, gi... - gi\|229837747\|ref\|ZP_04457907.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229704124\|gb\|EEO... gi\|229697335, gi... - gi\|229840969\|ref\|ZP_04461128.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229843070, gi... - gi\|229843070\|ref\|ZP_04463220.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1040_YERPE - UPF0325 protein YPO1040/y3141/YP_2811 OS=Yersinia pestis GN=YPO1040 PE=3 SV=1 Y3127_YERPB - UPF0325 protein YPTS_3127 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3127 PE=... Y1062_YERPY - UPF0325 protein YPK_1062 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1062 PE=3...	203.0	[0..1]	[126..1]
gi\|84394417, gi\|... - gi\|84394417\|ref\|ZP_00993134.1\| hypothetical protein V12B01_21976 [Vibrio splendidus 12B01], gi\|84374... gi\|86146893, gi\|... - gi\|86146893\|ref\|ZP_01065212.1\| hypothetical protein MED222_21064 [Vibrio sp. MED222], gi\|85835345\|gb...	201.0	[0..1]	[127..1]
gi\|77972706, gi\|... - gi\|77972706\|ref\|ZP_00828265.1\| COG1196: Chromosome segregation ATPases [Yersinia frederiksenii ATCC ...	201.0	[0..1]	[126..1]
gi\|238784875, gi... - gi\|77957685\|ref\|ZP_00821734.1\| COG1196: Chromosome segregation ATPases [Yersinia bercovieri ATCC 439... gi\|77963179 - gi\|77963179\|ref\|ZP_00826991.1\| COG1196: Chromosome segregation ATPases [Yersinia mollaretii ATCC 439...	201.0	[0..1]	[126..1]
Y2321_VIBPA - UPF0325 protein VP2321 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2321 PE=... Y2321_VIBPA, YN2... - (Q87MD5) Hypothetical UPF0325 protein VP2321, UPF0325 protein VP2321 OS=Vibrio parahaemolyticus GN=V... gi\|153840387, gi... - gi\|153840387\|ref\|ZP_01993054.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	201.0	[0..1]	[127..1]
gi\|91223470, gi\|... - gi\|91223470\|ref\|ZP_01258735.1\| hypothetical protein V12G01_22428 [Vibrio alginolyticus 12G01], gi\|91...	200.0	[0..1]	[127..1]
gi\|116183485, gi... - gi\|75853969\|ref\|ZP_00761700.1\| COG1196: Chromosome segregation ATPases [Vibrio sp. Ex25], gi\|1161834...	200.0	[0..1]	[127..1]
gi\|229519277, gi... - gi\|229519277\|ref\|ZP_04408720.1\| chromosome segregation ATPase [Vibrio cholerae RC9], gi\|229343966\|gb... gi\|229513905, gi... - gi\|229513905\|ref\|ZP_04403367.1\| chromosome segregation ATPase [Vibrio cholerae TMA 21], gi\|229349086... gi\|229369822, gi... - gi\|229607167\|ref\|YP_002877815.1\| chromosome segregation ATPase [Vibrio cholerae MJ-1236], gi\|2293698... gi\|229341134, gi... - gi\|229522209\|ref\|ZP_04411626.1\| chromosome segregation ATPase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|121586181, gi... - gi\|121586181\|ref\|ZP_01675972.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215495... gi\|153217365, gi... - gi\|153217365\|ref\|ZP_01951116.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113611\|... gi\|121628502, gi... - gi\|121729751\|ref\|ZP_01682190.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628502\|g... gi\|124121449, gi... - gi\|153803006\|ref\|ZP_01957592.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121449... gi\|153221404, gi... - gi\|153221404\|ref\|ZP_01952382.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241197... gi\|126509130, gi... - gi\|153820323\|ref\|ZP_01972990.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|254845098, gi... - gi\|254849393\|ref\|ZP_05238743.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254845098\|... gi\|9656826, gi\|1... - gi\|9656826\|gb\|AAF95408.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11280806 - gi\|11280806\|pir\|\|G82097 conserved hypothetical protein VC2264 [imported] - Vibrio cholerae (strain N... gi\|126518835, gi... - gi\|229512142\|ref\|ZP_04401621.1\| chromosome segregation ATPase [Vibrio cholerae B33], gi\|229352107\|gb... gi\|194535836, gi... - gi\|254222921\|ref\|ZP_04916785.1\| conserved hypothetical protein [Vibrio cholerae RC385], gi\|194535836... gi\|153828223, gi... - gi\|153828223\|ref\|ZP_01980890.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887631... gi\|147675190, gi... - gi\|227118710\|ref\|YP_002820606.1\| hypothetical protein VC395_2380 [Vibrio cholerae O395], gi\|22701416... gi\|229507663, gi... - gi\|229507663\|ref\|ZP_04397168.1\| chromosome segregation ATPase [Vibrio cholerae BX 330286], gi\|229355... gi\|227010276, gi... - gi\|227082388\|ref\|YP_002810939.1\| hypothetical protein VCM66_2187 [Vibrio cholerae M66-2], gi\|2270102...	200.0	[0..1]	[126..11]
Y1027_PECAS - UPF0325 protein ECA1027 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA1027 ... Y1027_ERWCT - UPF0325 protein ECA1027 OS=Erwinia carotovora subsp. atroseptica GN=ECA1027 PE=3 SV=1	199.0	[0..1]	[126..1]
Y2264_VIBCH - UPF0325 protein VC_2264 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|75827552 - gi\|75827552\|ref\|ZP_00756987.1\| hypothetical protein VchoO_01001717 [Vibrio cholerae O395] gi\|75828881, gi\|... - gi\|75828881\|ref\|ZP_00758213.1\| hypothetical protein VchoM_01003121 [Vibrio cholerae MO10], gi\|116187... gi\|75814840 - gi\|75814840\|ref\|ZP_00745385.1\| hypothetical protein VchoV_01002460 [Vibrio cholerae V52] gi\|116215553, gi... - gi\|75822266\|ref\|ZP_00751925.1\| hypothetical protein VchoR_01002489 [Vibrio cholerae RC385], gi\|11621... gi\|229332509, gi... - gi\|229528735\|ref\|ZP_04418125.1\| chromosome segregation ATPase [Vibrio cholerae 12129(1)], gi\|2293325... Y2264_VIBCH, YM6... - (Q9KPU8) Hypothetical UPF0325 protein VC2264, UPF0325 protein VC_2264 OS=Vibrio cholerae GN=VC_2264 ...	199.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPHLTGLGI HDPSQIERYS LRQEAHKDVL KIYFHKQKGE FFAKSVKFKY PRQVKNVLVD  60
   61 SGSHQYKEVT EINRNLTLVI DELNKITKPP KQEDVDIKQK ILTDLKHLEK VVASKIAEIE 120
  121 ADLEKLK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.831	a.47.2	t-snare proteins

Predicted functions:

Term	Confidence	Notes
binding	0.22875194039319	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: