YRC Public Data Repository - Protein Structure Prediction

Protein:	YOAB_ECOLI
Organism:	Escherichia coli
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOAB_ECOLI.

Description	E-value	Query Range	Subject Range
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	160.0	[0..6]	[113..11]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	159.0	[0..6]	[113..11]
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	159.0	[0..6]	[113..22]
gi\|186685855, gi... - gi\|23127695\|ref\|ZP_00109558.1\| COG1357: Uncharacterized low-complexity proteins [Nostoc punctiforme ...	156.0	[0..1]	[114..301]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	154.0	[0..2]	[113..8]
gi\|86145067, gi\|... - gi\|86145067\|ref\|ZP_01063399.1\| Putative translation initiation inhibitor [Vibrio sp. MED222], gi\|858...	150.0	[0..2]	[113..7]
gi\|58177560, gi\|... - gi\|58177562\|pdb\|1XRG\|C Chain C, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-296...	150.0	[0..4]	[113..40]
gi\|37197949, gi\|... - gi\|37679206\|ref\|NP_933815.1\| putative translation initiation inhibitor [Vibrio vulnificus YJ016], gi... gi\|27363650, gi\|... - gi\|27363650\|ref\|NP_759178.1\| putative translation initiation inhibitor [Vibrio vulnificus CMCP6], gi...	150.0	[0..6]	[113..11]
gi\|125975280, gi... - gi\|67874400\|ref\|ZP_00504186.1\| YjgF-like protein [Clostridium thermocellum ATCC 27405], gi\|67851173\|... gi\|196198252, gi... - gi\|196252394\|ref\|ZP_03151053.1\| endoribonuclease L-PSP [Clostridium thermocellum DSM 4150], gi\|19619...	149.0	[0..4]	[113..10]
gi\|56378418, gi\|... - gi\|56418576\|ref\|YP_145894.1\| translation initiation inhibitor [Geobacillus kaustophilus HTA426], gi\|... gi\|221088012, gi... - gi\|221088012\|ref\|ZP_03557546.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC61], gi\|220708005\|gb\|E... gi\|229329342, gi... - gi\|229499758\|ref\|ZP_04393438.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC52], gi\|229329342\|gb\|E...	149.0	[0..2]	[114..6]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIVRIDAEA RWSDVVIHNN TLYYTGVPEN LDADAFEQTA NTLAQIDAVL EKQGSNKSSI  60
   61 LDATIFLADK NDFAAMNKAW DAWVVAGHAP VRCTVQAGLM NPKYKVEIKI VAAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2dyyA
Description:	No description for 2dyyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits