YRC Public Data Repository - Protein Structure Prediction

Protein:	YNJH_ECOLI
Organism:	Escherichia coli
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNJH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218554326, gi... - gi\|218554326\|ref\|YP_002387239.1\| hypothetical protein ECIAI1_1821 [Escherichia coli IAI1], gi\|218361... gi\|82776795, gi\|... - gi\|82776795\|ref\|YP_403144.1\| hypothetical protein SDY_1515 [Shigella dysenteriae Sd197], gi\|81240943... gi\|188495471, gi... - gi\|188495471\|ref\|ZP_03002741.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849067... gi\|157157965, gi... - gi\|157157965\|ref\|YP_001463058.1\| hypothetical protein EcE24377A_1982 [Escherichia coli E24377A], gi\|...	150.0	[0..1]	[90..1]
gi\|190900917, gi... - gi\|191169035\|ref\|ZP_03030799.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190900917\|... gi\|193065781, gi... - gi\|193065781\|ref\|ZP_03046844.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926553\|... gi\|24051783, gi\|... - gi\|24112845\|ref\|NP_707355.1\| hypothetical protein SF1465 [Shigella flexneri 2a str. 301], gi\|2405178... gi\|30041226, gi\|... - gi\|30062977\|ref\|NP_837148.1\| hypothetical protein S1580 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|187732833, gi... - gi\|187732833\|ref\|YP_001880556.1\| hypothetical protein SbBS512_E2012 [Shigella boydii CDC 3083-94], g... gi\|110614982, gi... - gi\|110805434\|ref\|YP_688954.1\| hypothetical protein SFV_1458 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|81245248, gi\|... - gi\|82543837\|ref\|YP_407784.1\| hypothetical protein SBO_1329 [Shigella boydii Sb227], gi\|81245248\|gb\|A... gi\|194418267, gi... - gi\|194433504\|ref\|ZP_03065782.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|209912381, gi... - gi\|209919122\|ref\|YP_002293206.1\| hypothetical protein ECSE_1931 [Escherichia coli SE11], gi\|20991238... gi\|193068947, gi... - gi\|193068947\|ref\|ZP_03049906.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|74311922, gi\|... - gi\|74311922\|ref\|YP_310341.1\| hypothetical protein SSON_1396 [Shigella sonnei Ss046], gi\|73855399\|gb\|... gi\|194428503, gi... - gi\|194428503\|ref\|ZP_03061042.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413381...	150.0	[0..1]	[90..1]
gi\|91210977, gi\|... - gi\|91210977\|ref\|YP_540963.1\| hypothetical protein UTI89_C1956 [Escherichia coli UTI89], gi\|91072551\|... gi\|237705711, gi... - gi\|237705711\|ref\|ZP_04536192.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115513056, gi... - gi\|117623932\|ref\|YP_852845.1\| hypothetical protein APECO1_830 [Escherichia coli APEC O1], gi\|1155130... gi\|26108418, gi\|... - gi\|26248015\|ref\|NP_754055.1\| hypothetical protein c2161 [Escherichia coli CFT073], gi\|26108418\|gb\|AA... gi\|227837387, gi... - gi\|227885814\|ref\|ZP_04003619.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783738...	145.0	[0..1]	[90..1]
gi\|191171753, gi... - gi\|191171753\|ref\|ZP_03033300.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908083\|... gi\|110343472, gi... - gi\|110641880\|ref\|YP_669610.1\| hypothetical protein ECP_1706 [Escherichia coli 536], gi\|110343472\|gb\|...	144.0	[0..1]	[90..1]
gi\|213648614 - gi\|213648614\|ref\|ZP_03378667.1\| hypothetical protein SentesTy_15829 [Salmonella enterica subsp. ente... gi\|213427781 - gi\|213427781\|ref\|ZP_03360531.1\| hypothetical protein SentesTyphi_20645 [Salmonella enterica subsp. e... gi\|213977860 - gi\|213977860\|ref\|ZP_03405119.1\| hypothetical protein Salmonellaentericaenterica_26489 [Salmonella en... gi\|213850396 - gi\|213850396\|ref\|ZP_03381294.1\| hypothetical protein SentesT_02015 [Salmonella enterica subsp. enter... gi\|16760595 - gi\|16760595\|ref\|NP_456212.1\| hypothetical protein STY1814 [Salmonella enterica subsp. enterica serov... gi\|16502891, gi\|... - gi\|25512481\|pir\|\|AE0710 probable exported protein STY1814 [imported] - Salmonella enterica subsp. en... gi\|213162976 - gi\|213162976\|ref\|ZP_03348686.1\| hypothetical protein Salmoneentericaenterica_24296 [Salmonella enter... gi\|29141645, gi\|... - gi\|29141645\|ref\|NP_804987.1\| hypothetical protein t1179 [Salmonella enterica subsp. enterica serovar...	133.0	[0..1]	[90..1]
gi\|56413714, gi\|... - gi\|56413714\|ref\|YP_150789.1\| hypothetical protein SPA1544 [Salmonella enterica subsp. enterica serov... gi\|197362637, gi... - gi\|197362637\|ref\|YP_002142274.1\| hypothetical protein SSPA1435 [Salmonella enterica subsp. enterica ...	131.0	[0..1]	[90..1]
gi\|62179892, gi\|... - gi\|62179892\|ref\|YP_216309.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	131.0	[0..1]	[90..1]
gi\|188016223, gi... - gi\|188016223\|gb\|EDU54345.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168756769, gi... - gi\|189356220\|gb\|EDU74639.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168762169, gi... - gi\|189367447\|gb\|EDU85863.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189360366, gi... - gi\|189360366\|gb\|EDU78785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|209768438, gi... - pir\|\|F85785 hypothetical protein Z2792 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|254592778, gi... - gi\|254793378\|ref\|YP_003078215.1\| hypothetical protein ECSP_2328 [Escherichia coli O157:H7 str. TW143... gi\|12515782, gi\|... - gi\|15802171\|ref\|NP_288193.1\| hypothetical protein Z2792 [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|13361933, gi\|... - gi\|15831720\|ref\|NP_310493.1\| hypothetical protein ECs2466 [Escherichia coli O157:H7], gi\|13361933\|db... gi\|209157316, gi... - gi\|209395916\|ref\|YP_002270830.1\| hypothetical protein ECH74115_2478 [Escherichia coli O157:H7 str. E... gi\|217318334, gi... - gi\|217328987\|ref\|ZP_03445068.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195937446 - gi\|195937446\|ref\|ZP_03082828.1\| hypothetical protein EscherichcoliO157_13512 [Escherichia coli O157:... gi\|208725292, gi... - gi\|208810776\|ref\|ZP_03252652.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208731133, gi... - gi\|208816790\|ref\|ZP_03257910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740460, gi... - gi\|208820337\|ref\|ZP_03260657.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|187769482, gi... - gi\|187769482\|gb\|EDU33326.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189000364, gi... - gi\|189000364\|gb\|EDU69350.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189372045, gi... - gi\|189372045\|gb\|EDU90461.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|13361933, gi\|... - gi\|15831720\|ref\|NP_310493.1\| hypothetical protein ECs2466 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189377533, gi... - gi\|189377533\|gb\|EDU95949.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...	131.0	[0..1]	[90..1]
lcl\|NC_016856.1_... - [gene=STM14_1578] [protein=hypothetical protein] [protein_id=YP_005237153.1] [location=1390194..1390... gi\|16764651, gi\|... - gi\|16764651\|ref\|NP_460266.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419817\|... gi\|197241192, gi... - gi\|197262937\|ref\|ZP_03163011.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|167991884, gi... - gi\|205329707\|gb\|EDZ16471.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova...	130.0	[0..1]	[89..1]
gi\|50121264, gi\|... - gi\|50121264\|ref\|YP_050431.1\| hypothetical protein ECA2336 [Pectobacterium atrosepticum SCRI1043], gi...	121.0	[0..1]	[89..5]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRALFAVVL AFPLIALANP HYRPDVEVNV PPEVFSSGGQ SAQPCTQCCV YQDQNYSEGA  60
   61 VIKAEGILLQ CQRDDKTLST NPLVWRRVKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.070581
Match:	PF07383.3
Description:	No description for PF07383.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.722	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.696	N/A	N/A	g.28.1	Thyroglobulin type-1 domain
View	Download	0.675	N/A	N/A	d.9.2	Description not found.
View	Download	0.643	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.612	N/A	N/A	d.9.1	Interleukin 8-like chemokines

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits