YRC Public Data Repository - Protein Structure Prediction

Protein:	YNFH_ECOLI
Organism:	Escherichia coli
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNFH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|117623776, gi... - gi\|117623776\|ref\|YP_852689.1\| oxidoreductase, membrane subunit [Escherichia coli APEC O1], gi\|115512...	168.0	[0..1]	[284..81]
gi\|21957599, gi\|... - gi\|22124777\|ref\|NP_668200.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis KIM], g... gi\|45440220, gi\|... - gi\|45440220\|ref\|NP_991759.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis biovar ...	149.0	[0..1]	[284..22]
gi\|75230961, gi\|... - gi\|75230961\|ref\|ZP_00717410.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli B7A], gi\|191...	146.0	[0..1]	[284..1]
gi\|81240991, gi\|... - gi\|82776843\|ref\|YP_403192.1\| putative DMSO reductase anchor subunit [Shigella dysenteriae Sd197], gi...	146.0	[0..1]	[284..1]
gi\|75190630, gi\|... - gi\|75190630\|ref\|ZP_00703897.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E24377A], gi... gi\|218351884, gi... - gi\|218695152\|ref\|YP_002402819.1\| oxidoreductase, membrane subunit [Escherichia coli 55989], gi\|21835... gi\|192959640, gi... - gi\|75239767\|ref\|ZP_00723728.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E110019], gi...	146.0	[0..1]	[284..1]
gi\|82544042, gi\|... - gi\|82544042\|ref\|YP_407989.1\| putative DMSO reductase anchor subunit [Shigella boydii Sb227], gi\|8124...	145.0	[0..1]	[284..1]
gi\|192927458, gi... - gi\|75257009\|ref\|ZP_00728569.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E22], gi\|193...	145.0	[0..1]	[284..1]
gi\|73855566, gi\|... - gi\|74312089\|ref\|YP_310508.1\| putative DMSO reductase anchor subunit [Shigella sonnei Ss046], gi\|7385...	145.0	[0..1]	[284..1]
gi\|56383486, gi\|... - gi\|56479935\|ref\|NP_707488.2\| putative DMSO reductase anchor subunit [Shigella flexneri 2a str. 301],... gi\|30041354, gi\|... - gi\|30063105\|ref\|NP_837276.1\| putative DMSO reductase anchor subunit [Shigella flexneri 2a str. 2457T... gi\|110615113, gi... - gi\|110805565\|ref\|YP_689085.1\| putative DMSO reductase anchor subunit [Shigella flexneri 5 str. 8401]...	145.0	[0..1]	[284..1]
gi\|168775815, gi... - gi\|187768659\|gb\|EDU32503.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|168771684, gi... - gi\|189359611\|gb\|EDU78030.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|168763712, gi... - gi\|189366179\|gb\|EDU84595.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|189355545, gi... - gi\|189355545\|gb\|EDU73964.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|195938979 - gi\|195938979\|ref\|ZP_03084361.1\| putative DMSO reductase anchor subunit [Escherichia coli O157:H7 str... gi\|189376930, gi... - gi\|189376930\|gb\|EDU95346.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|168789422, gi... - gi\|189370962\|gb\|EDU89378.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|188999206, gi... - gi\|188999206\|gb\|EDU68192.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|168750602, gi... - gi\|188015274\|gb\|EDU53396.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|13361762, gi\|... - gi\|15831550\|ref\|NP_310323.1\| putative DMSO reductase anchor subunit [Escherichia coli O157:H7 str. S... gi\|254793207, gi... - gi\|254793207\|ref\|YP_003078044.1\| oxidoreductase, membrane subunit [Escherichia coli O157:H7 str. TW1... gi\|25324037, gi\|... - pir\|\|E85764 probable DMSO reductase anchor subunit Z2579 [imported] - Escherichia coli (strain O157:... gi\|217328825, gi... - gi\|217328825\|ref\|ZP_03444906.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli... gi\|209400906, gi... - gi\|209400906\|ref\|YP_002270661.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli... gi\|15802004, gi\|... - gi\|15802004\|ref\|NP_288025.1\| putative DMSO reductase anchor subunit [Escherichia coli O157:H7 EDL933... gi\|208730954, gi... - gi\|208816611\|ref\|ZP_03257731.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli ... gi\|13361762, gi\|... - gi\|15831550\|ref\|NP_310323.1\| putative DMSO reductase anchor subunit [Escherichia coli O157:H7], gi\|1... gi\|208725056, gi... - gi\|208810540\|ref\|ZP_03252416.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli ...	145.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGWHEWPL VIFTVLGQCV VGALIVSGIG WFAAKNDADR QRIVRGMFFL WLLMGVGFIA  60
   61 SVMHLGSPLR AFNSLNRIGA SGLSNEIAAG SIFFAVGGLW WLVAVI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKMPQALGKL WLLFSMALGV IFVWMMTCVY QIDTVPTWHN GYTTLAFFLT VLLSGPILAA  60
   61 AILRAARVTF NTTPFAIISV LALIACAGVI VLQGLSLASI HSSVQQASAL VPDYASLQVW 120
  121 RVVLLCAGLG CWLCPLIRRR EPHVAGLILG LILILGGEMI GRVLFYGLHM TVGMAIAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits