YRC Public Data Repository - Protein Structure Prediction

Protein:	YNAE_ECOLI
Organism:	Escherichia coli
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNAE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|253977560, gi... - gi\|254288403\|ref\|YP_003054151.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|16129503, gi\|... - gi\|1787826\|gb\|AAC74617.1\| Qin prophage; predicted DNA-binding transcriptional regulator [Escherichia... gi\|157066700, gi... - gi\|157161020\|ref\|YP_001458338.1\| hypothetical protein EcHS_A1634 [Escherichia coli HS], gi\|157066700... gi\|157159097, gi... - gi\|157159097\|ref\|YP_001462836.1\| hypothetical protein EcE24377A_1753 [Escherichia coli E24377A], gi\|... gi\|89108385, gi\|... - gi\|89108385\|ref\|AP_002165.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|209917808, gi... - gi\|209917808\|ref\|YP_002291892.1\| hypothetical protein ECSE_0617 [Escherichia coli SE11], gi\|20991106... gi\|169889046, gi... - gi\|170081211\|ref\|YP_001730531.1\| Qin prophage; DNA-binding transcriptional regulator [Escherichia co... gi\|238900764, gi... - gi\|238900764\|ref\|YP_002926560.1\| Qin prophage; putative DNA-binding transcriptional regulator [Esche... gi\|218705027, gi... - gi\|218705027\|ref\|YP_002412546.1\| conserved hypothetical protein; putative DNA-binding transcriptiona... gi\|253973499, gi... - gi\|254161598\|ref\|YP_003044706.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... YDFK_ECOLI - Hypothetical protein ydfK - Escherichia coli gi\|218370184, gi... - gi\|218700198\|ref\|YP_002407827.1\| conserved hypothetical protein; putative DNA-binding transcriptiona... gi\|242377146, gi... - gi\|251785017\|ref\|YP_002999321.1\| hypothetical protein B21_01514 [Escherichia coli BL21], gi\|25178487... gi\|1787826\|gb\|AA... - Qin prophage; predicted DNA-binding transcriptional regulator [Escherichia coli K12], Qin prophage; ...	154.0	[0..1]	[88..1]
gi\|115515856, gi... - gi\|117626732\|ref\|YP_860055.1\| hypothetical protein APECO1_2007 [Escherichia coli APEC O1], gi\|115515... gi\|218368372, gi... - gi\|218561603\|ref\|YP_002394516.1\| conserved hypothetical protein; putative DNA-binding transcriptiona...	153.0	[0..1]	[88..1]
gi\|26109393, gi\|... - gi\|26248987\|ref\|NP_755027.1\| hypothetical protein c3145 [Escherichia coli CFT073], gi\|26109393\|gb\|AA... gi\|218551674, gi... - gi\|218551674\|ref\|YP_002385466.1\| conserved hypothetical protein; putative DNA-binding transcriptiona...	151.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINNILRNI FMKSKDTLKW FPAQLPEVRI ILGDAVVEVA KQGRPINTRT LLDYIEGNIK  60
   61 KTSWLDNKEL LQTAISVLKD NQNLNGKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.736	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.685	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.669	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.646	a.74.1	Cyclin-like
View	Download	0.646	a.74.1	Cyclin-like
View	Download	0.642	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.642	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.632	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.632	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.521	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.475	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.394	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.369	a.4.1	Homeodomain-like
View	Download	0.316	a.159.4	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits