YRC Public Data Repository - Protein Structure Prediction

Protein:	YMGB_ECOLI
Organism:	Escherichia coli
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMGB_ECOLI.

Description	E-value	Query Range	Subject Range
ARIR_ECOL6 - Regulatory protein AriR OS=Escherichia coli O6 GN=ariR PE=3 SV=1 gi\|85376566 - gi\|85376566\|gb\|ABC70493.1\| conserved hypothetical protein [Escherichia coli] gi\|218364860, gi... - gi\|218558091\|ref\|YP_002391004.1\| hypothetical protein ECS88_1227 [Escherichia coli S88], gi\|21836486... gi\|218426674, gi... - gi\|218689110\|ref\|YP_002397322.1\| hypothetical protein ECED1_1306 [Escherichia coli ED1a], gi\|2184266... gi\|190908736, gi... - gi\|191171004\|ref\|ZP_03032555.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908736\|... gi\|215264468, gi... - gi\|215486396\|ref\|YP_002328827.1\| hypothetical protein E2348C_1283 [Escherichia coli O127:H6 str. E23... ARIR_ECOL5 - Regulatory protein AriR OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ariR PE=3 SV=1 ARIR_ECOK1 - Regulatory protein AriR OS=Escherichia coli O1:K1 / APEC GN=ariR PE=3 SV=1 gi\|227886428, gi... - gi\|227886428\|ref\|ZP_04004233.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783663... gi\|237705114, gi... - gi\|237705114\|ref\|ZP_04535595.1\| regulatory protein ariR [Escherichia sp. 3_2_53FAA], gi\|226899871\|gb... ARIR_ECOL6 - Regulatory protein AriR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ariR PE=3 ...	132.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEDTTIHNA ITDKALASYF RSSGNLLEEE SAVLGQAVTN LMLSGDNVNN KNIILSLIHS  60
   61 LETTSDILKA DVIRKTLEIV LRYTADDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.917	a.60.13	Putative methyltransferase TM0872, insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits