YRC Public Data Repository - Protein Structure Prediction

Protein:	YMFO_ECOLI
Organism:	Escherichia coli
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMFO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|125974137, gi... - gi\|67916086\|ref\|ZP_00509808.1\| Phage portal protein, HK97 family [Clostridium thermocellum ATCC 2740...	183.0	[0..2]	[157..3]
gi\|77162693, gi\|... - gi\|77411267\|ref\|ZP_00787617.1\| phage portal protein, HK97 family [Streptococcus agalactiae CJB111], ...	183.0	[0..2]	[153..3]
gi\|57224605, gi\|... - gi\|57234157\|ref\|YP_181802.1\| HK97 family portal protein , putative [Dehalococcoides ethenogenes 195]...	181.0	[0..2]	[157..3]
gi\|71491449, gi\|... - gi\|71542028\|ref\|ZP_00663709.1\| Phage portal protein [Syntrophomonas wolfei str. Goettingen], gi\|7149...	181.0	[0..2]	[156..3]
gi\|227543566, gi... - gi\|227543566\|ref\|ZP_03973615.1\| phage portal protein [Lactobacillus reuteri CF48-3A], gi\|227186406\|g... gi\|227956386, gi... - gi\|227975670\|ref\|ZP_04023930.1\| phage portal protein [Lactobacillus reuteri SD2112], gi\|227956386\|gb... gi\|68160864 - gi\|68160864\|gb\|AAY86878.1\| lr1464 [Lactobacillus reuteri]	180.0	[0..2]	[157..3]
gi\|50914486, gi\|... - gi\|50914486\|ref\|YP_060458.1\| portal protein [Streptococcus pyogenes MGAS10394], gi\|50903560\|gb\|AAT87... gi\|50261615, gi\|... - gi\|50261615\|gb\|AAT72383.1\| phage portal protein [Streptococcus pyogenes], gi\|40218570\|gb\|AAR83224.1\|...	179.0	[0..1]	[151..1]
gi\|166854137, gi... - gi\|167039897\|ref\|YP_001662882.1\| HK97 family phage portal protein [Thermoanaerobacter sp. X514], gi\|...	177.0	[0..2]	[156..5]
gi\|116095687, gi... - gi\|116630105\|ref\|YP_815277.1\| hypothetical protein LGAS_1483 [Lactobacillus gasseri ATCC 33323], gi\|... gi\|238854142, gi... - gi\|238854142\|ref\|ZP_04644489.1\| phage portal protein, HK97 family [Lactobacillus gasseri 202-4], gi\|...	175.0	[0..2]	[157..3]
gi\|76787772, gi\|... - gi\|76787772\|ref\|YP_329373.1\| prophage LambdaSa04, HK97 family portal protein [Streptococcus agalacti...	175.0	[0..2]	[153..3]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSGLFQRK SDAPVTTPAE LADAIGLSYD TYTGKQISSQ RAMRLTAVFS CVRVLAESVG  60
   61 MLPCNLYHLN GSLKQRATGE RLHKLISTHP NGYMTPQEFW ELVVTCLCLR GNFYAYKVKA 120
  121 FGEVAELLPV DPGCVVYALG RCQRWPEGDR RECYSAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits