YRC Public Data Repository - Protein Structure Prediction

Protein:	YMFN_ECOLI
Organism:	Escherichia coli
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMFN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67873465, gi\|... - gi\|67873465\|ref\|ZP_00503744.1\| Phage Terminase [Clostridium thermocellum ATCC 27405], gi\|67851861\|gb...	485.0	[0..2]	[455..423]
gi\|23505447, gi\|... - gi\|23505447\|ref\|NP_700375.1\| Terminase large subunit [Salmonella phage ST64B], gi\|23379194\|gb\|AAL258... lcl\|NC_016856.1_... - [gene=STM14_2452] [protein=terminase large subunit] [protein_id=YP_005237998.1] [location=complement...	475.0	[0..3]	[455..128]
gi\|193064347, gi... - gi\|75257712\|ref\|ZP_00729203.1\| COG4626: Phage terminase-like protein, large subunit [Escherichia col...	475.0	[0..3]	[455..128]
gi\|218547996, gi... - gi\|218547996\|ref\|YP_002381787.1\| putative phage terminase [Escherichia fergusonii ATCC 35469], gi\|21... gi\|91073560, gi\|... - gi\|91211986\|ref\|YP_541972.1\| bacteriophage V large terminase subunit [Escherichia coli UTI89], gi\|91... gi\|218559616, gi... - gi\|218559616\|ref\|YP_002392529.1\| putative phage terminase [Escherichia coli S88], gi\|218366385\|emb\|C... gi\|115513990, gi... - gi\|117624866\|ref\|YP_853779.1\| bacteriophage V large terminase subunit [Escherichia coli APEC O1], gi... gi\|226899798, gi... - gi\|237706758\|ref\|ZP_04537239.1\| bacteriophage V large terminase subunit [Escherichia sp. 3_2_53FAA],...	474.0	[0..3]	[455..128]
gi\|74313212, gi\|... - gi\|74313212\|ref\|YP_311631.1\| hypothetical protein SSON_2779 [Shigella sonnei Ss046], gi\|73856689\|gb\|...	470.0	[0..3]	[455..128]
gi\|57224604, gi\|... - gi\|57234156\|ref\|YP_181803.1\| terminase, large subunit, putative [Dehalococcoides ethenogenes 195], g...	461.0	[0..8]	[455..98]
gi\|166854136, gi... - gi\|167039896\|ref\|YP_001662881.1\| phage terminase [Thermoanaerobacter sp. X514], gi\|166854136\|gb\|ABY9... gi\|242232147, gi... - gi\|242256317\|ref\|ZP_04801210.1\| Terminase [Thermoanaerobacter sp. X513], gi\|242232147\|gb\|EES34465.1\|...	458.0	[0..9]	[455..100]
gi\|75227641, gi\|... - gi\|75227641\|ref\|ZP_00714386.1\| COG4626: Phage terminase-like protein, large subunit [Escherichia col...	456.0	[0..3]	[455..128]
gi\|77745341 - gi\|77745341\|gb\|ABB02571.1\| phage terminase-like protein large subunit [Lactobacillus reuteri]	456.0	[0..11]	[453..99]
gi\|18152367, gi\|... - gi\|18249900\|ref\|NP_543088.1\| putative terminase [Enterobacteria phage phiP27], gi\|18152367\|emb\|CAC83...	455.0	[0..3]	[455..122]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLTGYVW DGCAASGMKL SSVAIMARLA DFSNDEGVCW PSIETIARQI GAGMSTVRTA  60
   61 IARLEAEGWL TRKARRQGDG SSPHCAVVDE YHEHATDALY TTMLTGMGAR RQPLMWAITT 120
  121 AGYNIEGPCY DKRREVIEML NGSVPNDELF GIIYTVDEGD DWTDPQVLEK ANPNIGVSVY 180
  181 REFLLSQQQR AKNNARLANV FKTKHLNIWA SARSAYF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	2o0hA
Description:	No description for 2o0hA was found.

Predicted Domain #2

Region A:
Residues: [218-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLVSWQSCED KSLTLEQFEG QPCILAFDLA RKLDMNSMAR LYTREIDGKT HYYSVAPRFW  60
   61 VPYDTVYSVE KNEDRRTAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.636	c.15.1	BRCT domain
View	Download	0.616	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.518	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.464	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.531	a.29.4	RecG, N-terminal domain

Predicted Domain #3

Region A:
Residues: [297-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFQKWVEMGV LTVTDGAEVD YRYILEEAKA ANKISPVSES PIDPFGATGL SHDLADEDLN  60
   61 PVTIIQNYTN MSDPMKELEA AIESGRFHHD GNPIMTWCIG NVVGKTIPGN DDVVKPVKEQ 120
  121 AENKIDGAVA LIMAVGRAML YEKEDTLSDH IESYGIRSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits