YRC Public Data Repository - Protein Structure Prediction

Protein:	YMCB_ECOLI
Organism:	Escherichia coli
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMCB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82776275, gi\|... - gi\|82776275\|ref\|YP_402624.1\| hypothetical protein SDY_0961 [Shigella dysenteriae Sd197], gi\|81240423...	174.0	[0..1]	[248..1]
gi\|254792242, gi... - gi\|254792242\|ref\|YP_003077079.1\| hypothetical protein ECSP_1154 [Escherichia coli O157:H7 str. TW143... gi\|209157875, gi... - gi\|209396475\|ref\|YP_002269711.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H... gi\|217321218, gi... - gi\|217324997\|ref\|ZP_03441081.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7... gi\|195935243 - gi\|195935243\|ref\|ZP_03080625.1\| hypothetical protein EscherichcoliO157_02102 [Escherichia coli O157:... gi\|208729471, gi... - gi\|208809670\|ref\|ZP_03252007.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7... gi\|208732016, gi... - gi\|208815368\|ref\|ZP_03256547.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7... gi\|208737714, gi... - gi\|208822229\|ref\|ZP_03262548.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7... gi\|168777085, gi... - gi\|187767612\|gb\|EDU31456.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|168781002, gi... - gi\|189001196\|gb\|EDU70182.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|25305816, gi\|... - pir\|\|A85634 hypothetical protein ymcB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189372742, gi... - gi\|189372742\|gb\|EDU91158.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|168800615, gi... - gi\|189377122\|gb\|EDU95538.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|15800906, gi\|... - gi\|15800906\|ref\|NP_286922.1\| hypothetical protein Z1402 [Escherichia coli O157:H7 EDL933], gi\|125142... gi\|168747400, gi... - gi\|188018212\|gb\|EDU56334.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|13360601, gi\|... - gi\|15830395\|ref\|NP_309168.1\| hypothetical protein ECs1141 [Escherichia coli O157:H7], gi\|13360601\|db... gi\|13360601, gi\|... - gi\|15830395\|ref\|NP_309168.1\| hypothetical protein ECs1141 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168754306, gi... - gi\|189358183\|gb\|EDU76602.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|189366597, gi... - gi\|189366597\|gb\|EDU85013.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str... gi\|189363289, gi... - gi\|189363289\|gb\|EDU81708.1\| group 4 capsule (G4C) polysaccharide, YmcB [Escherichia coli O157:H7 str...	174.0	[0..1]	[248..1]
gi\|114335300, gi... - gi\|69951028\|ref\|ZP_00638820.1\| Polysaccharide export protein [Shewanella frigidimarina NCIMB 400], g...	173.0	[0..12]	[244..660]
gi\|193066324, gi... - gi\|75255594\|ref\|ZP_00727378.1\| hypothetical protein EcolE2_01004361 [Escherichia coli E22], gi\|19306... gi\|194429826, gi... - gi\|75208939\|ref\|ZP_00709212.1\| hypothetical protein EcolB_01003882 [Escherichia coli B171], gi\|19442...	173.0	[0..1]	[248..1]
gi\|74311542, gi\|... - gi\|74311542\|ref\|YP_309961.1\| hypothetical protein SSON_0992 [Shigella sonnei Ss046], gi\|73855019\|gb\|... gi\|124500068, gi... - gi\|124529113\|ref\|ZP_01700223.1\| protein of unknown function DUF1017 [Escherichia coli B], gi\|1245000... gi\|192955918, gi... - gi\|75234379\|ref\|ZP_00718749.1\| hypothetical protein EcolE1_01003752 [Escherichia coli E110019], gi\|1... gi\|191166569, gi... - gi\|75230259\|ref\|ZP_00716756.1\| hypothetical protein EcolB7_01001519 [Escherichia coli B7A], gi\|19116... gi\|157158170, gi... - gi\|75190052\|ref\|ZP_00703319.1\| hypothetical protein EcolE_01003346 [Escherichia coli E24377A], gi\|15... gi\|170020615, gi... - gi\|170020615\|ref\|YP_001725569.1\| hypothetical protein EcolC_2611 [Escherichia coli ATCC 8739], gi\|16... gi\|209911497, gi... - gi\|209918238\|ref\|YP_002292322.1\| hypothetical protein ECSE_1047 [Escherichia coli SE11], gi\|20991149...	172.0	[0..1]	[248..1]
gi\|24115381, gi\|... - gi\|24115381\|ref\|NP_709891.1\| hypothetical protein SF4177 [Shigella flexneri 2a str. 301], gi\|2405468... gi\|30064619, gi\|... - gi\|30064619\|ref\|NP_838790.1\| hypothetical protein S3554 [Shigella flexneri 2a str. 2457T], gi\|300428...	172.0	[0..4]	[248..2]
gi\|88595368 - gi\|88595368\|gb\|AAL09161.2\| outer membrane capsular polysaccharide transport protein-Wza [Vibrio vuln...	171.0	[0..9]	[239..140]
gi\|82544691, gi\|... - gi\|82544691\|ref\|YP_408638.1\| hypothetical protein SBO_2245 [Shigella boydii Sb227], gi\|81246102\|gb\|A...	171.0	[0..1]	[248..1]
gi\|187428240, gi... - gi\|75175455\|ref\|ZP_00695675.1\| hypothetical protein SboyB_01004464 [Shigella boydii BS512], gi\|18773...	171.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLQSYFIA SVLYVMTPHA FAQGTVTIYL PGEQQTLSVG PVENVVQLVT QPQLRDRLWW  60
   61 PGALLTDSAA KAKALKDYQH VMAQLASWEA EADDDVAATI KSVRQQLLNL NITGRLPVKL 120
  121 DPDFVRVDEN SNPPLVGDYT LYTVQRPVTI TLLGAVSGAG QLPWQAGRSV TDYLQDHPRL 180
  181 AGADKNNVMV ITPEGETVVA PVALWNKRHV EPPPGSQLWL GFSAHVLPEK YADLNDQIVS 240
  241 VLTQRVPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2j58A
Description:	No description for 2j58A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits