YRC Public Data Repository - Protein Structure Prediction

Protein:	YLYA_BACMT
Organism:	Bacillus methanolicus
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLYA_BACMT.

Description	E-value	Query Range	Subject Range
gi\|56380670, gi\|... - gi\|56420828\|ref\|YP_148146.1\| hypothetical protein GK2293 [Geobacillus kaustophilus HTA426], gi\|56380...	107.0	[0..1]	[113..1]
RIBT_BACSU - Protein RibT OS=Bacillus subtilis (strain 168) GN=ribT PE=3 SV=1 gi\|221319487 - gi\|221319487\|ref\|ZP_03600781.1\| reductase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221314565 - gi\|221314565\|ref\|ZP_03596370.1\| reductase [Bacillus subtilis subsp. subtilis str. NCIB 3610] RIBT_BACSU - Protein RibT OS=Bacillus subtilis GN=ribT PE=4 SV=1 gi\|221323763 - gi\|221323763\|ref\|ZP_03605057.1\| reductase [Bacillus subtilis subsp. subtilis str. SMY]	106.0	[0..1]	[113..1]
gi\|4538520 - gi\|4538520\|emb\|CAB39370.1\| ribTD protein [Bacillus amyloliquefaciens]	104.0	[0..1]	[113..1]
gi\|30180377, gi\|... - gi\|30248782\|ref\|NP_840852.1\| N-acetylglutamate synthase [Nitrosomonas europaea ATCC 19718], gi\|30180...	102.0	[0..1]	[118..291]
gi\|89099063, gi\|... - gi\|89099063\|ref\|ZP_01171942.1\| hypothetical protein B14911_08687 [Bacillus sp. NRRL B-14911], gi\|890...	100.0	[0..1]	[113..1]
gi\|98661046 - gi\|98661046\|dbj\|GAA01832.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	99.0	[0..4]	[118..25]
gi\|88918275, gi\|... - gi\|88935010\|ref\|ZP_01140648.1\| acetyltransferase, GNAT family [Geobacter uraniumreducens Rf4], gi\|88...	99.0	[0..5]	[120..2]
gi\|114331047, gi... - gi\|71549974\|ref\|ZP_00670134.1\| Amino-acid N-acetyltransferase [Nitrosomonas eutropha C71], gi\|714847...	98.0	[0..1]	[118..291]
gi\|52786210, gi\|... - gi\|52786210\|ref\|YP_092039.1\| RibT [Bacillus licheniformis ATCC 14580], gi\|52348712\|gb\|AAU41346.1\| Ri...	98.0	[0..1]	[113..1]
gi\|68184783, gi\|... - gi\|91772131\|ref\|YP_564823.1\| N-acetylglutamate synthase [Methanococcoides burtonii DSM 6242], gi\|917...	98.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIRYKKAFE KIAMGLLSFM PNEKDLKKLQ QTMKQYETEE DRQLFLWKEE EDIIGLIGVL  60
   61 VVNEYEVEIH HISVNPSHRH QGIGKSMVKA LRDIYPDKEL IPNENTAAFI EKCEICHGSE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2pdoA
Description:	No description for 2pdoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits