YRC Public Data Repository - Protein Structure Prediction

Protein:	BSSR_ECOLI, YLIH...
Organism:	Escherichia coli
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BSSR_ECOLI, YLIH....

Description	E-value	Query Range	Subject Range
gi\|26107210, gi\|... - gi\|26246811\|ref\|NP_752851.1\| Hypothetical protein yliH [Escherichia coli CFT073], gi\|26107210\|gb\|AAN...	214.0	[0..1]	[127..12]
gi\|187730261, gi... - gi\|187730261\|ref\|YP_001880976.1\| biofilm regulator BssR [Shigella boydii CDC 3083-94], gi\|187427253\|... gi\|188491005, gi... - gi\|188495806\|ref\|ZP_03003076.1\| biofilm regulator BssR [Escherichia coli 53638], gi\|188491005\|gb\|EDU... gi\|209911344, gi... - gi\|209918085\|ref\|YP_002292169.1\| biofilm formation regulatory protein BssR [Escherichia coli SE11], ... gi\|91209870, gi\|... - gi\|91209870\|ref\|YP_539856.1\| hypothetical protein YliH [Escherichia coli UTI89], gi\|91071444\|gb\|ABE0... gi\|157158184, gi... - gi\|157158184\|ref\|YP_001462032.1\| biofilm formation regulatory protein BssR [Escherichia coli E24377A... gi\|157160317, gi... - gi\|157160317\|ref\|YP_001457635.1\| biofilm formation regulatory protein BssR [Escherichia coli HS], gi... gi\|237707201, gi... - gi\|237707201\|ref\|ZP_04537682.1\| biofilm regulator BssR [Escherichia sp. 3_2_53FAA], gi\|226898411\|gb\|...	214.0	[0..1]	[127..12]
gi\|238913832 - gi\|238913832\|ref\|ZP_04657669.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|29142457, gi\|... - gi\|29142457\|ref\|NP_805799.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp. e... gi\|16759770 - gi\|16759770\|ref\|NP_455387.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp. e... gi\|213853080 - gi\|213853080\|ref\|ZP_03382612.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|214001866 - gi\|214001866\|ref\|ZP_03412601.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|224582666, gi... - gi\|224582666\|ref\|YP_002636464.1\| hypothetical protein SPC_0851 [Salmonella enterica subsp. enterica ... gi\|213428066 - gi\|213428066\|ref\|ZP_03360816.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|213585312 - gi\|213585312\|ref\|ZP_03367138.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|213622045 - gi\|213622045\|ref\|ZP_03374828.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|213647370 - gi\|213647370\|ref\|ZP_03377423.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=bssR] [protein=biofilm formation regulatory protein BssR] [protein_id=YP_005236591.1] [locatio... gi\|25332567, gi\|... - gi\|25332567\|pir\|\|AI0603 conserved hypothetical protein STY0893 [imported] - Salmonella enterica subs... gi\|16419360, gi\|... - gi\|16764215\|ref\|NP_459830.1\| biofilm formation regulatory protein BssR [Salmonella typhimurium LT2],... gi\|161614889, gi... - gi\|161614889\|ref\|YP_001588854.1\| biofilm formation regulatory protein BssR [Salmonella enterica subs... gi\|205271887, gi... - gi\|205352106\|ref\|YP_002225907.1\| biofilm formation regulatory protein BssR [Salmonella enterica subs... gi\|207856288, gi... - gi\|207856288\|ref\|YP_002242939.1\| biofilm formation regulatory protein BssR [Salmonella enterica subs... gi\|213051907 - gi\|213051907\|ref\|ZP_03344785.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|213420672 - gi\|213420672\|ref\|ZP_03353738.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp... gi\|197094450, gi... - gi\|197362973\|ref\|YP_002142610.1\| biofilm formation regulatory protein BssR [Salmonella enterica subs... gi\|198242777, gi... - gi\|198242777\|ref\|YP_002214819.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar... gi\|199603255, gi... - gi\|200390810\|ref\|ZP_03217421.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar ... gi\|56414050, gi\|... - gi\|56414050\|ref\|YP_151125.1\| biofilm formation regulatory protein BssR [Salmonella enterica subsp. e... gi\|204930058, gi... - gi\|204930058\|ref\|ZP_03221079.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar ... gi\|194469755, gi... - gi\|194469755\|ref\|ZP_03075739.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar ... gi\|194710013, gi... - gi\|194734511\|ref\|YP_002113945.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar... gi\|197213859, gi... - gi\|197250156\|ref\|YP_002145814.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar... gi\|197263894, gi... - gi\|197263894\|ref\|ZP_03163968.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar ... gi\|205324655, gi... - gi\|205324655\|gb\|EDZ12494.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar Sain... gi\|205329580, gi... - gi\|205329580\|gb\|EDZ16344.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205334773, gi... - gi\|205334773\|gb\|EDZ21537.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar Kent... gi\|168236792, gi... - gi\|197290192\|gb\|EDY29549.1\| biofilm regulator BssR [Salmonella enterica subsp. enterica serovar Schw...	192.0	[0..1]	[126..1]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVDRQRIDL LNRLIDARVD LAAYVQLRKA KGYMSVSESN HLRDNFFKLN RELHDKSLRL  60
   61 NLHLDQEEWS ALHHAEEALA TAAVCLMSGH HDCPTVITVN ADKLENCLMS LTLSIQSLQK 120
  121 HAMLEKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits