YRC Public Data Repository - Protein Structure Prediction

Protein:	YJJI_ECOLI
Organism:	Escherichia coli
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJJI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110346409, gi... - gi\|110644817\|ref\|YP_672547.1\| hypothetical protein ECP_4764 [Escherichia coli 536], gi\|110346409\|gb\|... gi\|91214095, gi\|... - gi\|91214095\|ref\|YP_544081.1\| hypothetical protein UTI89_C5150 [Escherichia coli UTI89], gi\|91075669\|... gi\|115515862, gi... - gi\|117626738\|ref\|YP_860061.1\| hypothetical protein APECO1_2001 [Escherichia coli APEC O1], gi\|115515... gi\|190906577, gi... - gi\|75239557\|ref\|ZP_00723527.1\| hypothetical protein EcolF_01003063 [Escherichia coli F11], gi\|191173...	572.0	[0..1]	[516..1]
gi\|192926716, gi... - gi\|75256292\|ref\|ZP_00727964.1\| hypothetical protein EcolE2_01003729 [Escherichia coli E22], gi\|19306... gi\|194429163, gi... - gi\|75209584\|ref\|ZP_00709802.1\| hypothetical protein EcolB_01003220 [Escherichia coli B171], gi\|19442...	571.0	[0..1]	[516..1]
gi\|26251269, gi\|... - gi\|26251269\|ref\|NP_757309.1\| hypothetical protein c5463 [Escherichia coli CFT073], gi\|26111702\|gb\|AA... gi\|227837961, gi... - gi\|227885132\|ref\|ZP_04002937.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783796...	571.0	[0..1]	[516..1]
gi\|190902558, gi... - gi\|75229440\|ref\|ZP_00715990.1\| hypothetical protein EcolB7_01002301 [Escherichia coli B7A], gi\|19116...	571.0	[0..1]	[516..1]
gi\|194439315, gi... - gi\|83585288\|ref\|ZP_00923936.1\| hypothetical protein Ecol1_01003476 [Escherichia coli 101-1], gi\|1944...	570.0	[0..1]	[516..1]
gi\|209915105, gi... - gi\|209921846\|ref\|YP_002295930.1\| hypothetical protein ECSE_4655 [Escherichia coli SE11], gi\|20991510... gi\|218556915, gi... - gi\|218556915\|ref\|YP_002389829.1\| hypothetical protein ECIAI1_4603 [Escherichia coli IAI1], gi\|218363... gi\|75234543, gi\|... - gi\|75234543\|ref\|ZP_00718884.1\| hypothetical protein EcolE1_01003541 [Escherichia coli E110019], gi\|1...	570.0	[0..1]	[516..1]
gi\|188496388, gi... - gi\|75515571\|ref\|ZP_00737728.1\| hypothetical protein Ecol5_01000675 [Escherichia coli 53638], gi\|1884...	570.0	[0..1]	[516..1]
gi\|74314815, gi\|... - gi\|74314815\|ref\|YP_313234.1\| hypothetical protein SSON_4531 [Shigella sonnei Ss046], gi\|73858292\|gb\|...	568.0	[0..1]	[516..1]
gi\|56130597, gi\|... - gi\|56416340\|ref\|YP_153415.1\| hypothetical protein SPA4380 [Salmonella enterica subsp. enterica serov... gi\|197365262, gi... - gi\|197365262\|ref\|YP_002144899.1\| hypothetical protein SSPA4065 [Salmonella enterica subsp. enterica ... gi\|205348754, gi... - gi\|205348754\|gb\|EDZ35385.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	562.0	[0..1]	[516..1]
gi\|30043882, gi\|... - gi\|30065618\|ref\|NP_839789.1\| hypothetical protein S4683 [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|24054947, gi\|... - gi\|24115610\|ref\|NP_710120.1\| hypothetical protein SF4412 [Shigella flexneri 2a str. 301], gi\|2405494...	562.0	[0..1]	[516..1]

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Predicted Domain #1

Region A:
Residues: [1-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSHENALQ QRCQQIVTSP VLSPEQKRHF LALEAENNLP YPQLPAEARR ALDEGVICDM  60
   61 FEGHAPYKPR YVLPDYARFL ANGSEWLELE GAKDLDDALS LLTILYHHVP SVTSMPVYLG 120
  121 QLDALLQPYV RILTQDEIDV RIKRFWRYLD RTLPDAFMHA NIGPSDSPIT RAILRADAEL 180
  181 KQVSPNLTFI YDPEITPDDL LLEVAKNICE CSKPHIANGP VHDKIFTKGG YGIVSCYNSL 240
  241 PLAGGGSTLV RLNLKAIAER SESLDDFFTR TLPHYCQQQI AIIDARCEFL YQQSHFFENS 300
  301 FLVKEGLINP ERFVPMFGMY GLAEAVNLLC EKEGIAARYG KEAAANEVGY RISAQLAEFV 360
  361 ANTPVKYGWQ KRAMLHAQSG ISSDIGTTPG ARLPYGDEPD PITHLQTVAP HHAYYYSGIS 420
  421 DILTLDETIK RNPQALVQLC LGAFKAGMRE FTANVSGNDL VRVTGYMVRL SDLEKYRAEG 480
  481 SRTNTTWLGE EAARNTRILE RQPRVISHEQ QMRFSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1h78A
Description:	Class III anaerobic ribonucleotide reductase NRDD subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.18415878184105	bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	0.569875345393126	bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups	0.41933825741435	bayes_pls_golite062009
ribonucleoside-diphosphate reductase activity	0.216543785160505	bayes_pls_golite062009
oxidoreductase activity	0.171634881240068	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: