YRC Public Data Repository - Protein Structure Prediction

Protein:	YJID_ECOLI
Organism:	Escherichia coli
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJID_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|537167, gi\|13... - gi\|537167\|gb\|AAA97222.1\| ORF_o133b [Escherichia coli], gi\|1361138\|pir\|\|S56551 yjiD protein - Escheri... gi\|49176490, gi\|... - gi\|49176490\|ref\|NP_418746.3\| unknown CDS [Escherichia coli K12], gb\|AAC77282.1\| orf, hypothetical pr... gi\|537167\|gb\|AAA... - ORF_o133b [Escherichia coli]	256.0	[0..1]	[130..4]
gi\|30065417, gi\|... - gi\|30065417\|ref\|NP_839588.1\| hypothetical protein S4448 [Shigella flexneri 2a str. 2457T], gi\|300436... gi\|187430502, gi... - gi\|187733510\|ref\|YP_001882926.1\| hypothetical protein SbBS512_E4778 [Shigella boydii CDC 3083-94], g... gi\|82546673, gi\|... - gi\|82546673\|ref\|YP_410620.1\| hypothetical protein SBO_4377 [Shigella boydii Sb227], gi\|81248084\|gb\|A... gi\|56384089, gi\|... - gi\|56480538\|ref\|NP_709906.2\| hypothetical protein SF4192 [Shigella flexneri 2a str. 301], gi\|5638408...	256.0	[0..1]	[130..4]
gi\|25337237, gi\|... - pir\|\|A86131 hypothetical protein yjiD [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13364763 - gi\|13364763\|dbj\|BAB38708.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|15804902, gi\|... - gi\|15804902\|ref\|NP_290943.1\| hypothetical protein Z5925 [Escherichia coli O157:H7 EDL933], gi\|125193... gi\|13364763 - gi\|13364763\|dbj\|BAB38708.1\| hypothetical protein [Escherichia coli O157:H7]	256.0	[0..1]	[130..4]
IRAD_ECO57 - Anti-adapter protein IraD OS=Escherichia coli O157:H7 GN=iraD PE=3 SV=2 gi\|254595729, gi... - gi\|254796329\|ref\|YP_003081166.1\| DNA replication/recombination/repair protein [Escherichia coli O157... gi\|38704258 - gi\|38704258\|ref\|NP_313312.2\| hypothetical protein ECs5285 [Escherichia coli O157:H7 str. Sakai] gi\|217320642, gi... - gi\|217324421\|ref\|ZP_03440505.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... IRAD_ECO5E - Anti-adapter protein IraD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=iraD PE=3 SV=1 gi\|208806934, gi... - gi\|208806934\|ref\|ZP_03249271.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937337 - gi\|195937337\|ref\|ZP_03082719.1\| hypothetical protein EscherichcoliO157_12935 [Escherichia coli O157:... gi\|168797897, gi... - gi\|189379491\|gb\|EDU97907.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189374918, gi... - gi\|189374918\|gb\|EDU93334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189000784, gi... - gi\|189000784\|gb\|EDU69770.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168766605, gi... - gi\|189364010\|gb\|EDU82429.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168760572, gi... - gi\|189369028\|gb\|EDU87444.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189357872, gi... - gi\|189357872\|gb\|EDU76291.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	256.0	[0..1]	[130..1]
gi\|110807969, gi... - gi\|110807969\|ref\|YP_691489.1\| hypothetical protein SFV_4200 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24115396, gi\|... - ref\|NP_709906.1\| yjiD gene product [Shigella flexneri 2a str. 301], gb\|AAN45613.1\| yjiD gene produc...	254.0	[0..2]	[130..1]
gi\|115515756, gi... - gi\|117626632\|ref\|YP_859955.1\| hypothetical protein APECO1_2106 [Escherichia coli APEC O1], gi\|115515...	231.0	[0..1]	[125..4]
gi\|52420910 - gi\|52420910\|emb\|CAH55789.1\| hypothetical protein [Escherichia coli] IRAD_ECOK1 - Anti-adapter protein IraD OS=Escherichia coli O1:K1 / APEC GN=iraD PE=3 SV=2 IRAD_ECOUT - Anti-adapter protein IraD OS=Escherichia coli (strain UTI89 / UPEC) GN=iraD PE=3 SV=1	231.0	[0..1]	[125..1]
gi\|26251213, gi\|... - gi\|26251213\|ref\|NP_757253.1\| hypothetical protein c5405 [Escherichia coli CFT073], gi\|26111646\|gb\|AA...	230.0	[0..1]	[125..4]
gi\|190908989, gi... - gi\|191170765\|ref\|ZP_03032317.1\| GPW/gp25 family protein [Escherichia coli F11], gi\|190908989\|gb\|EDV6... IRAD_ECOL5 - Anti-adapter protein IraD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=iraD PE=3 SV=1	229.0	[0..1]	[125..1]
gi\|75258407 - gi\|75258407\|ref\|ZP_00729838.1\| hypothetical protein EcolE2_01001902 [Escherichia coli E22] gi\|75179387 - gi\|75179387\|ref\|ZP_00699391.1\| hypothetical protein SboyB_01000493 [Shigella boydii BS512]	175.0	[0..48]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRQSLQAVL PEISGNKTSS LRKSVCSDLL TLFNSPHSAL PSLLVSGMPE WQVHNPSDKH  60
   61 LQSWYCRQLR SALLFHEPRI AALQVNLKEA YCHTLAISLE IMLYHDDEPL TFDLVWDNGG 120
  121 WRSATLENVS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.55
Match:	2ia7A
Description:	No description for 2ia7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits