YRC Public Data Repository - Protein Structure Prediction

Protein:	YJHF_ECOLI
Organism:	Escherichia coli
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJHF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	191.0	[0..5]	[448..948]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	187.0	[0..5]	[411..515]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	179.0	[0..5]	[449..500]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	177.0	[0..5]	[449..579]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	177.0	[0..3]	[443..591]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	170.0	[0..5]	[448..676]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	169.0	[0..5]	[448..630]
GNTP_BACSU - Gluconate permease OS=Bacillus subtilis (strain 168) GN=gntP PE=3 SV=1 GNTP_BACSU - Gluconate permease OS=Bacillus subtilis GN=gntP PE=3 SV=1 gi\|221325500 - gi\|221325500\|ref\|ZP_03606794.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. SMY] gi\|221321217 - gi\|221321217\|ref\|ZP_03602511.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316304 - gi\|221316304\|ref\|ZP_03598109.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. NCIB 3610...	168.0	[0..1]	[449..1]
gi\|72494236, gi\|... - gi\|73661721\|ref\|YP_300502.1\| gluconate permease [Staphylococcus saprophyticus subsp. saprophyticus A...	166.0	[0..2]	[449..7]
gi\|56909120, gi\|... - gi\|56962881\|ref\|YP_174608.1\| H+:gluconate symporter [Bacillus clausii KSM-K16], gi\|56909120\|dbj\|BAD6...	165.0	[0..1]	[445..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVVAGI ALLLLLTIKI KLNTFVSLII VSIAVAIASG MDLSKVVTSV ESGLGGTLGH  60
   61 IGLIFGFGVM LGRLLADAGG AQRIALTMLN YFGKNKLDWA VVCSAFIVGI ALFFEVGLIL 120
  121 LVPILFAIAR EA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KISPMFMCVP MLSGLLVAHG FLPPHPGPTV IAREYGADVG LVLIYGIIVG IPTFILCGPV  60
   61 LNKFCQRIIP DAFKKEGNIA SLGATRRFSE SEMPGFGISF LTAMLPVILM AVVTIIQMTH 120
  121 AKSAADSGLF YNVILFLGNS TIAMLISLLF AIYTMGLGRG K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [294-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIPDLMDSCG KAIAGIAGLL LIIGGGGAFK QVLIDSGVGQ YISTLVSGMD INPILMAWGV  60
   61 AAFLRICLGS ATVAAISTAG LVIPLLAVHP NTNLALITLA TGAGSCICSH VNDASFWMIK 120
  121 DFFGLTTKET LLSWTLMSTL LSISGLIFIL LASLVL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits