YRC Public Data Repository - Protein Structure Prediction

Protein:	YJGR_ECOLI
Organism:	Escherichia coli
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJGR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192956857, gi... - gi\|75235432\|ref\|ZP_00719640.1\| COG0433: Predicted ATPase [Escherichia coli E110019], gi\|193069803\|re...	427.0	[0..1]	[500..1]
gi\|157163738, gi... - gi\|75198111\|ref\|ZP_00708181.1\| COG0433: Predicted ATPase [Escherichia coli HS], gi\|157163738\|ref\|YP_...	426.0	[0..1]	[500..1]
gi\|124500764, gi... - gi\|124528322\|ref\|ZP_01699646.1\| protein of unknown function DUF853, NPT hydrolase putative [Escheric... gi\|170021729, gi... - gi\|170021729\|ref\|YP_001726683.1\| protein of unknown function DUF853 NPT hydrolase putative [Escheric... gi\|75515497, gi\|... - gi\|75515497\|ref\|ZP_00737654.1\| COG0433: Predicted ATPase [Escherichia coli 53638], gi\|188492489\|ref\|...	425.0	[0..1]	[500..1]
gi\|82546484, gi\|... - gi\|82546484\|ref\|YP_410431.1\| hypothetical protein SBO_4177 [Shigella boydii Sb227], gi\|81247895\|gb\|A... gi\|187730306, gi... - gi\|75179364\|ref\|ZP_00699368.1\| COG0433: Predicted ATPase [Shigella boydii BS512], gi\|187730306\|ref\|Y...	425.0	[0..1]	[500..1]
gi\|190901257, gi... - gi\|75228076\|ref\|ZP_00714751.1\| COG0433: Predicted ATPase [Escherichia coli B7A], gi\|191168709\|ref\|ZP...	425.0	[0..1]	[500..1]
gi\|24115428, gi\|... - gi\|24115428\|ref\|NP_709938.1\| hypothetical protein SF4226 [Shigella flexneri 2a str. 301], gi\|2405474...	425.0	[0..1]	[500..17]
gi\|74314742, gi\|... - gi\|74314742\|ref\|YP_313161.1\| hypothetical protein SSON_4448 [Shigella sonnei Ss046], gi\|73858219\|gb\|...	424.0	[0..1]	[500..1]
gi\|110617545, gi... - gi\|110807997\|ref\|YP_691517.1\| hypothetical protein SFV_4230 [Shigella flexneri 5 str. 8401], gi\|1106...	424.0	[0..1]	[500..1]
gi\|209749430, gi... - pir\|\|B86125 hypothetical protein yjgR [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15804855, gi\|... - gi\|15804855\|ref\|NP_290896.1\| hypothetical protein Z5875 [Escherichia coli O157:H7 EDL933], gi\|125192... gi\|13364718, gi\|... - gi\|15834494\|ref\|NP_313267.1\| hypothetical protein ECs5240 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|13364718, gi\|... - gi\|15834494\|ref\|NP_313267.1\| hypothetical protein ECs5240 [Escherichia coli O157:H7], gi\|13364718\|db... gi\|217321692, gi... - gi\|217325471\|ref\|ZP_03441555.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189368965, gi... - gi\|189368965\|gb\|EDU87381.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189374720, gi... - gi\|189374720\|gb\|EDU93136.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi...	423.0	[0..1]	[500..1]
gi\|83586710, gi\|... - gi\|83586710\|ref\|ZP_00925342.1\| COG0433: Predicted ATPase [Escherichia coli 101-1], gi\|194437846\|ref\|...	423.0	[0..1]	[500..1]

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Predicted Domain #1

Region A:
Residues: [1-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPLLIART PDTELFLLPG MANRHGLITG ATGTGKTVTL QKLAESLSEI GVPVFMADVK  60
   61 GDLTGVAQAG TVSEKLLARL KNIGVNDWQP HANPVVVWDI FGEKGHPVRA TVSDLGPLLL 120
  121 ARLLNLNDVQ SGVLNIIFRI ADDQGLLLLD FKDLRAITQY IGDNAKSFQN QYGNISSASV 180
  181 GAIQRGLLSL EQQGAAHFFG EPMLDIKDWM RTDANGKGVI NILSAEKLYQ MPKLYAASLL 240
  241 WMLSELYEQL PEAGDLEKPK LVFFFDEAHL LFNDAPQVLL DKIEQVIRLI RSKGVGVWFV 300
  301 SQNPSDIPDN VLGQLGNRVQ HALRAFTPKD QKAVKAAAQT MRANPAFDTE KAIQELGTGE 360
  361 ALISFLDAKG SPSVVERAMV IAPCSRMGPV TEDERNGLIN HSPVYGKYED EVDRESAYEM 420
  421 LQKGFQASTE QQNNPPAKGK EVAVDDGILG GLKDILFGTT GPRGGKKDGV VQTMAKSAAR 480
  481 QVTNQIVRGM LGSLLGGRRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.154902
Match:	2iusA
Description:	No description for 2iusA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits