YRC Public Data Repository - Protein Structure Prediction

Protein:	YJGD_ECOLI
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJGD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77978584, gi\|... - gi\|77978584\|ref\|ZP_00834011.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia inte...	187.0	[0..1]	[120..23]
gi\|77960005 - gi\|77960005\|ref\|ZP_00823909.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia moll...	187.0	[0..1]	[120..23]
gi\|77974069, gi\|... - gi\|77974069\|ref\|ZP_00829612.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia fred...	187.0	[0..1]	[119..23]
gi\|91075384, gi\|... - gi\|91213810\|ref\|YP_543796.1\| hypothetical protein UTI89_C4861 [Escherichia coli UTI89], gi\|91075384\|... gi\|218430206, gi... - gi\|218692642\|ref\|YP_002400854.1\| hypothetical protein ECED1_5108 [Escherichia coli ED1a], gi\|2184302... gi\|191170828, gi... - gi\|75242360\|ref\|ZP_00726122.1\| COG3076: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|115515723, gi... - gi\|117626599\|ref\|YP_859922.1\| hypothetical protein APECO1_2139 [Escherichia coli APEC O1], gi\|115515... gi\|218702958, gi... - gi\|218702958\|ref\|YP_002410587.1\| hypothetical protein ECIAI39_4728 [Escherichia coli IAI39], gi\|2183... gi\|237703930, gi... - gi\|237703930\|ref\|ZP_04534411.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	184.0	[0..1]	[138..1]
gi\|145600509, gi... - gi\|145600509\|ref\|YP_001164585.1\| hypothetical protein YPDSF_3255 [Yersinia pestis Pestoides F], gi\|1... gi\|89101648, gi\|... - gi\|89101648\|ref\|ZP_01174363.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|149289150, gi... - gi\|153997513\|ref\|ZP_02022613.1\| hypothetical protein YPE_3969 [Yersinia pestis CA88-4125], gi\|149289... gi\|21957463, gi\|... - gi\|22124654\|ref\|NP_668077.1\| hypothetical protein y0741 [Yersinia pestis KIM], gi\|21957463\|gb\|AAM843... gi\|25355027 - pir\|\|AG0418 conserved hypothetical protein YPO3445 [imported] - Yersinia pestis (strain CO92) gi\|51594879, gi\|... - gi\|51594879\|ref\|YP_069070.1\| hypothetical protein YPTB0527 [Yersinia pseudotuberculosis IP 32953], g... gi\|45440491, gi\|... - gi\|45440491\|ref\|NP_992030.1\| hypothetical protein YP_0639 [Yersinia pestis biovar Microtus str. 9100... gi\|15981371, gi\|... - gi\|218930461\|ref\|YP_002348336.1\| hypothetical protein YPO3445 [Yersinia pestis CO92], gi\|16123593\|re... gi\|108808937, gi... - gi\|108808937\|ref\|YP_652853.1\| hypothetical protein YPA_2946 [Yersinia pestis Antiqua], gi\|108780850\|... gi\|229901011, gi... - gi\|229901011\|ref\|ZP_04516135.1\| ribonuclease E inhibitor protein [Yersinia pestis Nepal516], gi\|2296... gi\|77631522, gi\|... - gi\|77631522\|ref\|ZP_00794108.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|165922281, gi... - gi\|165925669\|ref\|ZP_02221501.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166010164, gi... - gi\|166010164\|ref\|ZP_02231062.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204523, gi... - gi\|166214291\|ref\|ZP_02240326.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167051029, gi... - gi\|167398525\|ref\|ZP_02304049.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q66F13\|Q66F13_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167420529, gi... - gi\|167420529\|ref\|ZP_02312282.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423398, gi... - gi\|167423398\|ref\|ZP_02315151.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|170025898, gi... - gi\|170025898\|ref\|YP_001722403.1\| hypothetical protein YPK_3683 [Yersinia pseudotuberculosis YPIII], ... gi\|186893889, gi... - gi\|186893889\|ref\|YP_001871001.1\| hypothetical protein YPTS_0558 [Yersinia pseudotuberculosis PB1/+],... gi\|229687147, gi... - gi\|229899655\|ref\|ZP_04514796.1\| ribonuclease E inhibitor protein [Yersinia pestis biovar Orientalis ... gi\|229700358, gi... - gi\|229896580\|ref\|ZP_04511747.1\| ribonuclease E inhibitor protein [Yersinia pestis Pestoides A], gi\|2... gi\|229695458, gi... - gi\|229839092\|ref\|ZP_04459251.1\| ribonuclease E inhibitor protein [Yersinia pestis biovar Orientalis ... gi\|162354500, gi... - gi\|77634906\|ref\|ZP_00796998.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pest...	182.0	[0..1]	[120..1]
gi\|238715531, gi... - gi\|77956489\|ref\|ZP_00820583.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia berc...	182.0	[0..1]	[115..23]
RRAB_SHEAM - Regulator of ribonuclease activity B OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rraB...	177.0	[0..1]	[115..1]
gi\|124544866, gi... - gi\|124544866\|ref\|ZP_01704114.1\| protein of unknown function DUF1260 [Shewanella putrefaciens 200], g... gi\|82721191, gi\|... - gi\|82741447\|ref\|ZP_00904168.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82721191\|...	176.0	[0..1]	[115..1]
SO0568 - conserved hypothetical protein gi\|24372161, gi\|... - gi\|24372161\|ref\|NP_716203.1\| hypothetical protein SO_0568 [Shewanella oneidensis MR-1], gi\|24346059\|...	175.0	[0..1]	[115..1]
gi\|145566084, gi... - gi\|77815919\|ref\|ZP_00815134.1\| Protein of unknown function DUF1260 [Shewanella putrefaciens CN-32], ...	174.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPEQLEEQ REETRLIIEE LLEDGSDPDA LYTIEHHLSA DDLETLEKAA VEAFKLGYEV  60
   61 TDPEELEVED GDIVICCDIL SECALNADLI DAQVEQLMTL AEKFDVEYDG WGTYFEDPNG 120
  121 EDGDDEDFVD EDDDGVRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1nxiA
Description:	Hypothetical protein VC0424
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits