YRC Public Data Repository - Protein Structure Prediction

Protein:	YJFK_ECOLI
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJFK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218697932, gi... - gi\|218697932\|ref\|YP_002405599.1\| hypothetical protein EC55989_4738 [Escherichia coli 55989], gi\|2183... gi\|75255910, gi\|... - gi\|75255910\|ref\|ZP_00727642.1\| hypothetical protein EcolE2_01004084 [Escherichia coli E22], gi\|19306... gi\|75234268, gi\|... - gi\|75234268\|ref\|ZP_00718656.1\| hypothetical protein EcolE1_01003818 [Escherichia coli E110019], gi\|1... gi\|194415414, gi... - gi\|75212265\|ref\|ZP_00712305.1\| hypothetical protein EcolB_01000868 [Escherichia coli B171], gi\|19442... gi\|157155103, gi... - gi\|75188894\|ref\|ZP_00702161.1\| hypothetical protein EcolE_01002171 [Escherichia coli E24377A], gi\|15... gi\|218556735, gi... - gi\|218556735\|ref\|YP_002389649.1\| hypothetical protein ECIAI1_4416 [Escherichia coli IAI1], gi\|218363...	320.0	[0..1]	[219..1]
gi\|209159730, gi... - gi\|209398330\|ref\|YP_002273725.1\| hypothetical protein ECH74115_5699 [Escherichia coli O157:H7 str. E... gi\|208740830, gi... - gi\|208820707\|ref\|ZP_03261027.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208812238, gi... - gi\|208812238\|ref\|ZP_03253567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208726673, gi... - gi\|208806872\|ref\|ZP_03249209.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|15834413, gi\|... - gi\|15834413\|ref\|NP_313186.1\| hypothetical protein ECs5159 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322049, gi... - gi\|217325828\|ref\|ZP_03441912.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|168774104, gi... - gi\|187770199\|gb\|EDU34043.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189364031, gi... - gi\|189364031\|gb\|EDU82450.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168760425, gi... - gi\|189368984\|gb\|EDU87400.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168754754, gi... - gi\|189357769\|gb\|EDU76188.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254796202, gi... - gi\|254796202\|ref\|YP_003081039.1\| hypothetical protein ECSP_5283 [Escherichia coli O157:H7 str. TW143... gi\|195935973 - gi\|195935973\|ref\|ZP_03081355.1\| hypothetical protein EscherichcoliO157_05820 [Escherichia coli O157:... gi\|168801838, gi... - gi\|189376075\|gb\|EDU94491.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189374819, gi... - gi\|189374819\|gb\|EDU93235.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168780615, gi... - gi\|189001692\|gb\|EDU70678.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|209750176, gi... - pir\|\|G91273 hypothetical protein ECs5159 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15834413, gi\|... - gi\|15834413\|ref\|NP_313186.1\| hypothetical protein ECs5159 [Escherichia coli O157:H7], gi\|13364636\|db... gi\|168751465, gi... - gi\|188014497\|gb\|EDU52619.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g...	319.0	[0..1]	[219..1]
gi\|81247986, gi\|... - gi\|82546575\|ref\|YP_410522.1\| hypothetical protein SBO_4272 [Shigella boydii Sb227], gi\|81247986\|gb\|A...	319.0	[0..1]	[219..1]
gi\|75198029, gi\|... - gi\|75198029\|ref\|ZP_00708099.1\| hypothetical protein EcolH_01003872 [Escherichia coli HS], gi\|1571636...	318.0	[0..1]	[219..1]
gi\|25332697 - pir\|\|G86114 hypothetical protein yjfK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12519171, gi\|... - gi\|15804772\|ref\|NP_290813.1\| hypothetical protein Z5790 [Escherichia coli O157:H7 EDL933], gi\|125191...	318.0	[0..1]	[219..1]
gi\|251787432, gi... - gi\|251787432\|ref\|YP_003001736.1\| hypothetical protein B21_04012 [Escherichia coli BL21], gi\|24237970... gi\|254164112, gi... - gi\|254164112\|ref\|YP_003047220.1\| hypothetical protein ECB_04050 [Escherichia coli B str. REL606], gi... gi\|253326236, gi... - gi\|254290862\|ref\|YP_003056610.1\| hypothetical protein ECD_04050 [Escherichia coli BL21(DE3)], gi\|253... gi\|83585079, gi\|... - gi\|83585079\|ref\|ZP_00923732.1\| hypothetical protein Ecol1_01003724 [Escherichia coli 101-1], gi\|1944...	318.0	[0..1]	[219..1]
gi\|75231224, gi\|... - gi\|75231224\|ref\|ZP_00717631.1\| hypothetical protein EcolB7_01000606 [Escherichia coli B7A], gi\|19116...	318.0	[0..1]	[219..1]
gi\|115515653, gi... - gi\|117626529\|ref\|YP_859852.1\| hypothetical protein APECO1_2209 [Escherichia coli APEC O1], gi\|115515... gi\|91075306, gi\|... - gi\|91213732\|ref\|YP_543718.1\| hypothetical protein UTI89_C4783 [Escherichia coli UTI89], gi\|91075306\|... gi\|218368111, gi... - gi\|218561342\|ref\|YP_002394255.1\| hypothetical protein ECS88_4769 [Escherichia coli S88], gi\|21836811... gi\|237703850, gi... - gi\|237703850\|ref\|ZP_04534331.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	317.0	[0..1]	[219..1]
gi\|227836347, gi... - gi\|227886774\|ref\|ZP_04004579.1\| cytoplasmic protein [Escherichia coli 83972], gi\|227836347\|gb\|EEJ468... gi\|26111507, gi\|... - gi\|26251075\|ref\|NP_757115.1\| hypothetical protein c5267 [Escherichia coli CFT073], gi\|26111507\|gb\|AA...	317.0	[0..1]	[219..1]
gi\|110644540, gi... - gi\|110644540\|ref\|YP_672270.1\| hypothetical protein ECP_4428 [Escherichia coli 536], gi\|110346132\|gb\|... gi\|191170649, gi... - gi\|75242427\|ref\|ZP_00726189.1\| hypothetical protein EcolF_01000890 [Escherichia coli F11], gi\|191170...	317.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFFQRLFG KDNKPAIARG PLGLHLNSGF TLDTLAFRLL EDELLIALPG EEFTVAAVSH  60
   61 IDLGGGSQIF RYYTSGDEFL QINTTGGEDI DDIDDIKLFV YEESYGISKE SHWREAINAK 120
  121 AMGAMTLNWQ EKRWQRFFNS EEPGNIEPVY MLEKVENQNH AKWEVHNFTM GYQRQVTEDT 180
  181 YEYLLLNGEE SFNDLGEPEW LFSRALGVDI PLTSLHIIG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits