YRC Public Data Repository - Protein Structure Prediction

Protein:	YJFC_ECOLI
Organism:	Escherichia coli
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJFC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77974134, gi\|... - gi\|77974134\|ref\|ZP_00829676.1\| COG0754: Glutathionylspermidine synthase [Yersinia frederiksenii ATCC...	492.0	[0..1]	[387..1]
gi\|36787248, gi\|... - gi\|37527812\|ref\|NP_931157.1\| hypothetical protein plu3957 [Photorhabdus luminescens subsp. laumondii...	489.0	[0..1]	[386..1]
gi\|91227597, gi\|... - gi\|91227597\|ref\|ZP_01261901.1\| hypothetical protein V12G01_20466 [Vibrio alginolyticus 12G01], gi\|91...	485.0	[0..1]	[386..1]
gi\|116184091, gi... - gi\|75854155\|ref\|ZP_00761867.1\| COG0754: Glutathionylspermidine synthase [Vibrio sp. Ex25], gi\|254229...	484.0	[0..1]	[386..1]
gi\|62129335, gi\|... - gi\|62181702\|ref\|YP_218119.1\| hypothetical protein SC3132 [Salmonella enterica subsp. enterica serova...	481.0	[0..1]	[387..1]
gi\|209400204, gi... - gi\|209400204\|ref\|YP_002273728.1\| glutathionylspermidine synthase domain protein [Escherichia coli O1... gi\|217320887, gi... - gi\|217324666\|ref\|ZP_03440750.1\| glutathionylspermidine synthase domain protein [Escherichia coli O15... gi\|195935976 - gi\|195935976\|ref\|ZP_03081358.1\| putative synthetase/amidase [Escherichia coli O157:H7 str. EC4024] gi\|208806702, gi... - gi\|208806702\|ref\|ZP_03249039.1\| glutathionylspermidine synthase domain protein [Escherichia coli O15... gi\|208734821, gi... - gi\|208813544\|ref\|ZP_03254873.1\| glutathionylspermidine synthase domain protein [Escherichia coli O15... gi\|208741478, gi... - gi\|208821355\|ref\|ZP_03261675.1\| glutathionylspermidine synthase domain protein [Escherichia coli O15... gi\|187770333, gi... - gi\|187770333\|gb\|EDU34177.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|189001655, gi... - gi\|189001655\|gb\|EDU70641.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|168784823, gi... - gi\|189374816\|gb\|EDU93232.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|254595605, gi... - gi\|254796205\|ref\|YP_003081042.1\| predicted synthetase/amidase [Escherichia coli O157:H7 str. TW14359... gi\|189376065, gi... - gi\|189376065\|gb\|EDU94481.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|188014509, gi... - gi\|188014509\|gb\|EDU52631.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|168754757, gi... - gi\|189357838\|gb\|EDU76257.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|168760428, gi... - gi\|189368903\|gb\|EDU87319.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|189364073, gi... - gi\|189364073\|gb\|EDU82492.1\| glutathionylspermidine synthase domain protein [Escherichia coli O157:H7... gi\|209750154, gi... - pir\|\|B86115 probable synthetase/amidase yjfC [imported] - Escherichia coli (strain O157:H7, substrai... gi\|12519174, gi\|... - gi\|15804775\|ref\|NP_290816.1\| putative synthetase/amidase [Escherichia coli O157:H7 EDL933], gi\|12519... gi\|15834416, gi\|... - gi\|15834416\|ref\|NP_313189.1\| putative synthetase/amidase [Escherichia coli O157:H7], gi\|13364639\|dbj... gi\|15834416, gi\|... - gi\|15834416\|ref\|NP_313189.1\| putative synthetase/amidase [Escherichia coli O157:H7 str. Sakai], gi\|1...	480.0	[0..1]	[387..1]
gi\|82778353, gi\|... - gi\|82778353\|ref\|YP_404702.1\| putative synthetase/amidase [Shigella dysenteriae Sd197], gi\|81242501\|g...	480.0	[0..1]	[385..1]
gi\|91212464, gi\|... - gi\|91212464\|ref\|YP_542450.1\| putative synthetase/amidase [Escherichia coli UTI89], gi\|91074038\|gb\|AB... gi\|117625351, gi... - gi\|117625351\|ref\|YP_854849.1\| putative synthetase/amidase [Escherichia coli APEC O1], gi\|115514475\|g... gi\|237706204, gi... - gi\|237706204\|ref\|ZP_04536685.1\| glutathionylspermidine synthase [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|218366891, gi... - gi\|218560122\|ref\|YP_002393035.1\| putative enzyme [Escherichia coli S88], gi\|218366891\|emb\|CAR04661.1... gi\|75240496, gi\|... - gi\|75240496\|ref\|ZP_00724424.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli F11], gi\|1...	479.0	[0..1]	[385..1]
gi\|110643283, gi... - gi\|110643283\|ref\|YP_671013.1\| putative glutathionylspermidine synthase [Escherichia coli 536], gi\|11...	479.0	[0..1]	[385..1]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRHNVPVRR DLDQIAADNG FDFHIIDNEI YWDESRAYRF TLRQIEEQIE KPTAELHQMC  60
   61 LEVVDRAVKD EEILTQLAIP PLYWDVIAES WRARDPSLYG RMDFAWCGNA PVKLLEYNAD 120
  121 TPTSLYESAY FQWLWLEDAR RSGIIPRDAD QYNAIQERLI SRFSELYSRE PFYFCCCQDT 180
  181 DEDRSTVLYL QDCAQQAGQE SRFIYIEDLG LGVGGVLTDL DDNVIQRAFK LYPLEWMMRD 240
  241 DNGPLLRKRR EQWVEPLWKS ILSNKGLMPL LWRFFPGHPN LLASWFDGEK PQIAAGESYV 300
  301 RKPIYSREGG NVTIFDGKNN VVDHADGDYA DEPMIYQAFQ PLPRFGDSYT LIGSWIVDDE 360
  361 ACGMGIREDN TLITKDTSRF VPHYIAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.045757
Match:	2io7A
Description:	No description for 2io7A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.87139587563481	bayes_pls_golite062009
ligase activity	1.57112931119664	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.348063613213741	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: