YRC Public Data Repository - Protein Structure Prediction

Protein:	YJAH_ECOLI
Organism:	Escherichia coli
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJAH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24115285, gi\|... - ref\|NP_709795.1\| hypothetical protein SF4073 [Shigella flexneri 2a str. 301], gb\|AAN45502.1\| orf, c... gi\|226903081, gi... - gi\|237702768\|ref\|ZP_04533249.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117626263, gi... - gi\|117626263\|ref\|YP_859586.1\| hypothetical protein APECO1_2474 [Escherichia coli APEC O1], gi\|115515... gi\|91212792, gi\|... - gi\|91212792\|ref\|YP_542778.1\| hypothetical protein UTI89_C3818 [Escherichia coli UTI89], gi\|91074366\|...	352.0	[0..1]	[231..3]
gi\|157069150, gi... - gi\|157163470\|ref\|YP_001460788.1\| hypothetical protein EcHS_A4235 [Escherichia coli HS], gi\|157069150... gi\|218372622, gi... - gi\|218702636\|ref\|YP_002410265.1\| hypothetical protein ECIAI39_4391 [Escherichia coli IAI39], gi\|2183... gi\|218707620, gi... - gi\|218707620\|ref\|YP_002415139.1\| hypothetical protein ECUMN_4525 [Escherichia coli UMN026], gi\|21843... gi\|56384055, gi\|... - gi\|56480504\|ref\|NP_709795.2\| hypothetical protein SF4073 [Shigella flexneri 2a str. 301], gi\|5638405... gi\|218692282, gi... - gi\|218692282\|ref\|YP_002400494.1\| hypothetical protein ECED1_4708 [Escherichia coli ED1a], gi\|2184298... gi\|242379532, gi... - gi\|251787259\|ref\|YP_003001563.1\| hypothetical protein B21_03831 [Escherichia coli BL21], gi\|24237953... gi\|81242971, gi\|... - gi\|82778823\|ref\|YP_405172.1\| hypothetical protein SDY_3725 [Shigella dysenteriae Sd197], gi\|81242971... gi\|218354441, gi... - gi\|218697709\|ref\|YP_002405376.1\| hypothetical protein EC55989_4486 [Escherichia coli 55989], gi\|2183... gi\|218363325, gi... - gi\|218556556\|ref\|YP_002389470.1\| hypothetical protein ECIAI1_4216 [Escherichia coli IAI1], gi\|218363... gi\|218367836, gi... - gi\|218561067\|ref\|YP_002393980.1\| hypothetical protein ECS88_4462 [Escherichia coli S88], gi\|21836783... gi\|209914739, gi... - gi\|209921480\|ref\|YP_002295564.1\| hypothetical protein ECSE_4289 [Escherichia coli SE11], gi\|20991473... gi\|215267405, gi... - gi\|215489333\|ref\|YP_002331764.1\| hypothetical protein E2348C_4308 [Escherichia coli O127:H6 str. E23... gi\|209751668, gi... - gi\|209751674\|gb\|ACI74144.1\| hypothetical protein ECs4924 [Escherichia coli], gi\|209751668\|gb\|ACI7414... gi\|30064717, gi\|... - gi\|30064717\|ref\|NP_838888.1\| hypothetical protein S3662 [Shigella flexneri 2a str. 2457T], gi\|300429... gi\|253975844, gi... - gi\|254163943\|ref\|YP_003047051.1\| hypothetical protein ECB_03878 [Escherichia coli B str. REL606], gi... gi\|188494115, gi... - gi\|188494115\|ref\|ZP_03001385.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848931... gi\|253326413, gi... - gi\|254290693\|ref\|YP_003056441.1\| hypothetical protein ECD_03878 [Escherichia coli BL21(DE3)], gi\|253... gi\|157156532, gi... - gi\|157156532\|ref\|YP_001465496.1\| hypothetical protein EcE24377A_4544 [Escherichia coli E24377A], gi\|...	352.0	[0..1]	[231..1]
gi\|26111203, gi\|... - gi\|26250772\|ref\|NP_756812.1\| hypothetical protein c4958 [Escherichia coli CFT073], gi\|26111203\|gb\|AA...	351.0	[0..1]	[231..3]
gi\|209751672, gi... - pir\|\|D91244 hypothetical protein ECs4924 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7], gi\|13364400\|db... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795999, gi... - gi\|254795999\|ref\|YP_003080836.1\| hypothetical protein ECSP_5071 [Escherichia coli O157:H7 str. TW143...	350.0	[0..1]	[231..1]
gi\|12518930, gi\|... - gi\|15804592\|ref\|NP_290633.1\| hypothetical protein Z5577 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|25332704 - pir\|\|B86092 hypothetical protein yjaH [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	349.0	[0..1]	[231..1]
gi\|213051533 - gi\|213051533\|ref\|ZP_03344411.1\| hypothetical protein Salmoneentericaenterica_00500 [Salmonella enter... gi\|25332708, gi\|... - gi\|25332708\|pir\|\|AG0931 conserved hypothetical protein STY3714 [imported] - Salmonella enterica subs... gi\|214001636 - gi\|214001636\|ref\|ZP_03412371.1\| hypothetical protein Salmonellentericaenterica_14727 [Salmonella ent... gi\|213647191 - gi\|213647191\|ref\|ZP_03377244.1\| hypothetical protein SentesTy_07750 [Salmonella enterica subsp. ente... gi\|29139409, gi\|... - gi\|29143774\|ref\|NP_807116.1\| hypothetical protein t3460 [Salmonella enterica subsp. enterica serovar... gi\|213609701 - gi\|213609701\|ref\|ZP_03369527.1\| hypothetical protein SentesTyp_03900 [Salmonella enterica subsp. ent... gi\|16762286 - gi\|16762286\|ref\|NP_457903.1\| hypothetical protein STY3714 [Salmonella enterica subsp. enterica serov... gi\|213586805 - gi\|213586805\|ref\|ZP_03368631.1\| hypothetical protein SentesTyph_38230 [Salmonella enterica subsp. en...	345.0	[0..1]	[231..1]
gi\|62130255, gi\|... - gi\|62182622\|ref\|YP_219039.1\| hypothetical protein SC4052 [Salmonella enterica subsp. enterica serova... gi\|224585711, gi... - gi\|224585711\|ref\|YP_002639510.1\| hypothetical protein SPC_4002 [Salmonella enterica subsp. enterica ...	342.0	[0..1]	[231..1]
gi\|6960344, gi\|1... - gi\|6960344\|gb\|AAF33504.1\| 74% identity over 170 of 231 amino acids with E. coli hypothetical 26.3 kD... gi\|167994973, gi... - gi\|205327249\|gb\|EDZ14013.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=yjaH] [protein=putative inner membrane protein] [protein_id=YP_005240453.1] [location=4400574....	342.0	[0..1]	[231..1]
gi\|56130254, gi\|... - gi\|56415997\|ref\|YP_153072.1\| hypothetical protein SPA4008 [Salmonella enterica subsp. enterica serov... gi\|194404958, gi... - gi\|194446295\|ref\|YP_002043419.1\| hypothetical protein SNSL254_A4504 [Salmonella enterica subsp. ente... gi\|168467897, gi... - gi\|195629013\|gb\|EDX48405.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161617310, gi... - gi\|161617310\|ref\|YP_001591275.1\| hypothetical protein SPAB_05161 [Salmonella enterica subsp. enteric...	340.0	[0..1]	[231..1]
gi\|152961837, gi... - gi\|153950342\|ref\|YP_001402796.1\| putative lipoprotein [Yersinia pseudotuberculosis IP 31758], gi\|152... gi\|51587935, gi\|... - gi\|51594653\|ref\|YP_068844.1\| hypothetical protein YPTB0298 [Yersinia pseudotuberculosis IP 32953], g... Q66FN7\|Q66FN7_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis	329.0	[0..1]	[231..3]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFNEGVVS PLLSFWRRSL MLAGALLLTA CSHNSSLPPF TASGFAEDQG AVRIWRKDSG  60
   61 DNVHLLAVFS PWRSGDTTTR EYRWQGDNLT LININVYSKP PVNIRARFDD RGDLSFMQRE 120
  121 SDGEKQQLSN DQIDLYRYRA DQIRQISDAL RQGRVVLRQG RWHAMEQTVT TCEGQTIKPD 180
  181 LDSQAIAHIE RRQSRSSVDV SVAWLEAPEG SQLLLVANSD FCRWQPNEKT F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits