YRC Public Data Repository - Protein Structure Prediction

Protein:	YIEJ_ECOLI
Organism:	Escherichia coli
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIEJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|253775648, gi... - gi\|254290419\|ref\|YP_003056167.1\| hypothetical protein ECD_03601 [Escherichia coli BL21(DE3)], gi\|253... gi\|242379256, gi... - gi\|251786983\|ref\|YP_003001287.1\| hypothetical protein B21_03545 [Escherichia coli BL21], gi\|24237925... gi\|254163669, gi... - gi\|254163669\|ref\|YP_003046777.1\| hypothetical protein ECB_03601 [Escherichia coli B str. REL606], gi... gi\|218354172, gi... - gi\|218697440\|ref\|YP_002405107.1\| hypothetical protein EC55989_4187 [Escherichia coli 55989], gi\|2183... gi\|209914453, gi... - gi\|209921194\|ref\|YP_002295278.1\| hypothetical protein ECSE_4003 [Escherichia coli SE11], gi\|20991445... gi\|218556284, gi... - gi\|218556284\|ref\|YP_002389198.1\| hypothetical protein ECIAI1_3897 [Escherichia coli IAI1], gi\|218363... gi\|83588419, gi\|... - gi\|83588419\|ref\|ZP_00927043.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|170022246, gi... - gi\|170022246\|ref\|YP_001727200.1\| hypothetical protein EcolC_4277 [Escherichia coli ATCC 8739], gi\|16... gi\|124530069, gi... - gi\|124530069\|ref\|ZP_01700852.1\| protein of unknown function UPF0167 [Escherichia coli B], gi\|1244994... gi\|188491650, gi... - gi\|75514222\|ref\|ZP_00736530.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192930490, gi... - gi\|75258255\|ref\|ZP_00729703.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75210673, gi\|... - gi\|75210673\|ref\|ZP_00710814.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157068878, gi... - gi\|75197613\|ref\|ZP_00707683.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	312.0	[0..1]	[195..1]
gi\|157155247, gi... - gi\|75188472\|ref\|ZP_00701739.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	310.0	[0..1]	[195..1]
gi\|75231013, gi\|... - gi\|75231013\|ref\|ZP_00717448.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	309.0	[0..1]	[195..1]
gi\|49081776 - gi\|49081776\|gb\|AAT50288.1\| PA1536 [synthetic construct]	252.0	[0..7]	[195..4]
gi\|194550869, gi... - gi\|84328451\|ref\|ZP_00976458.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... YF36_PSEAE, Y153... - (Q9I3H7) Hypothetical UPF0167 protein PA1536, UPF0167 protein PA1536 OS=Pseudomonas aeruginosa GN=PA... gi\|194545623, gi... - gi\|84321730\|ref\|ZP_00970084.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|107100967 - gi\|107100967\|ref\|ZP_01364885.1\| hypothetical protein PaerPA_01001997 [Pseudomonas aeruginosa PACS2] Y1536_PSEAE - UPF0167 protein PA1536 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... gi\|218772734, gi... - gi\|218892508\|ref\|YP_002441375.1\| hypothetical protein PLES_37921 [Pseudomonas aeruginosa LESB58], gi...	251.0	[0..7]	[195..4]
gi\|115584701, gi... - gi\|32041579\|ref\|ZP_00139162.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a...	248.0	[0..7]	[195..4]
gi\|253798638, gi... - gi\|253798638\|ref\|YP_003031639.1\| hypothetical protein TBMG_01688 [Mycobacterium tuberculosis KZN 143... gi\|254551335 - gi\|254551335\|ref\|ZP_05141782.1\| hypothetical protein Mtube_12880 [Mycobacterium tuberculosis '98-R60... gi\|148823495, gi... - gi\|76783830\|ref\|ZP_00771019.1\| COG3196: Uncharacterized protein conserved in bacteria [Mycobacterium... gi\|254816116 - gi\|254816116\|ref\|ZP_05221117.1\| hypothetical protein MtubKZN_10236 [Mycobacterium tuberculosis KZN 4... gi\|124601495, gi... - gi\|81253696\|ref\|ZP_00878231.1\| COG3196: Uncharacterized protein conserved in bacteria [Mycobacterium... gi\|255097100 - gi\|255097100\|ref\|ZP_05326578.1\| hypothetical protein MtubK_12944 [Mycobacterium tuberculosis KZN 605... gi\|215412031 - gi\|215412031\|ref\|ZP_03420795.1\| hypothetical protein Mtub9_11878 [Mycobacterium tuberculosis 94_M424... gi\|215403686 - gi\|215403686\|ref\|ZP_03415867.1\| hypothetical protein Mtub0_08387 [Mycobacterium tuberculosis 02_1987... gi\|121493824, gi... - gi\|121638176\|ref\|YP_978400.1\| hypothetical protein BCG_2311 [Mycobacterium bovis BCG str. Pasteur 11... gi\|215431228 - gi\|215431228\|ref\|ZP_03429147.1\| hypothetical protein MtubE_11224 [Mycobacterium tuberculosis EAS054] gi\|215427672 - gi\|215427672\|ref\|ZP_03425591.1\| hypothetical protein MtubT9_15313 [Mycobacterium tuberculosis T92] gi\|15609432, gi\|... - gi\|3261614\|emb\|CAB01001.1\| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv], gi\|156... gi\|254365075, gi... - gi\|254365075\|ref\|ZP_04981121.1\| conserved hypothetical protein [Mycobacterium tuberculosis str. Haar... gi\|218754016 - gi\|218754016\|ref\|ZP_03532812.1\| hypothetical protein MtubG1_11534 [Mycobacterium tuberculosis GM 150... gi\|148662117, gi... - gi\|167969829\|ref\|ZP_02552106.1\| hypothetical protein MtubH3_18124 [Mycobacterium tuberculosis H37Ra]... gi\|215446529 - gi\|215446529\|ref\|ZP_03433281.1\| hypothetical protein MtubT_11515 [Mycobacterium tuberculosis T85] gi\|7477148 - gi\|7477148\|pir\|\|C70733 hypothetical protein Rv2295 - Mycobacterium tuberculosis (strain H37RV) gi\|224773783, gi... - gi\|224990670\|ref\|YP_002645357.1\| hypothetical protein JTY_2305 [Mycobacterium bovis BCG str. Tokyo 1... gi\|31619066, gi\|... - gi\|31793473\|ref\|NP_855966.1\| hypothetical protein Mb2317 [Mycobacterium bovis AF2122/97], gi\|3161906... gi\|219558273 - gi\|219558273\|ref\|ZP_03537349.1\| hypothetical protein MtubT1_13607 [Mycobacterium tuberculosis T17]	247.0	[0..2]	[195..31]
Y2295_MYCTO - UPF0167 protein MT2352 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2352 PE=3 SV=1 YM95_MYCTU, Y229... - (P67309) Hypothetical UPF0167 protein Rv2295/MT2352, UPF0167 protein Rv2295/MT2352 OS=Mycobacterium ... Y2317_MYCBO - UPF0167 protein Mb2317 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2317 PE=3 SV=1 YN17_MYCBO, Y231... - (P67310) Hypothetical UPF0167 protein Mb2317, UPF0167 protein Mb2317 OS=Mycobacterium bovis GN=Mb231... Y2295_MYCTU - UPF0167 protein Rv2295 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2295 PE=1 SV=1	246.0	[0..2]	[195..6]
gi\|94415092, gi\|... - gi\|94415092\|ref\|ZP_01294941.1\| hypothetical protein PaerP_01003200 [Pseudomonas aeruginosa PA7], gi\|...	242.0	[0..7]	[195..4]
gi\|78507536, gi\|... - gi\|78684599\|ref\|ZP_00849382.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78507536\|gb...	238.0	[0..8]	[193..3]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNIRPLPQ FKYHPKPLET GAFEQDKTVE CDCCEQQTSV YYSGPFYCVD EVEHLCPWCI  60
   61 ADGSAAEKFA GSFQDDASIE GVEFEYDEED EFAGIKNTYP DEMLKELVER TPGYHGWQQE 120
  121 FWLAHCGDFC VFIGYVGWND IKDRLDEFAN LEEDCENFGI RNSDLAKCLQ KGGHCQGYLF 180
  181 RCLHCGKLRL WGDFS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	157.823909
Match:	PF03691.5
Description:	No description for PF03691.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits