YRC Public Data Repository - Protein Structure Prediction

Protein:	YIBA_ECOLI
Organism:	Escherichia coli
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIBA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|113475509, gi... - gi\|71674567\|ref\|ZP_00672314.1\| Armadillo:HEAT:Caspase-1, p20:PBS lyase HEAT-like repeat [Trichodesmi...	234.0	[0..2]	[279..645]
gi\|72396494, gi\|... - gi\|73669332\|ref\|YP_305347.1\| hypothetical protein Mbar_A1826 [Methanosarcina barkeri str. Fusaro], g...	228.0	[0..3]	[278..722]
gi\|17229395, gi\|... - gi\|17229395\|ref\|NP_485943.1\| hypothetical protein alr1903 [Nostoc sp. PCC 7120], gi\|17130993\|dbj\|BAB... gi\|25535206 - pir\|\|AI2043 hypothetical protein alr1903 [imported] - Nostoc sp. (strain PCC 7120)	208.0	[0..3]	[279..881]
gi\|75703439, gi\|... - gi\|75909714\|ref\|YP_324010.1\| signal transduction protein [Anabaena variabilis ATCC 29413], gi\|757034...	208.0	[0..2]	[278..783]
gi\|19918441, gi\|... - gi\|20093106\|ref\|NP_619181.1\| phycocyanin alpha phycocyanobilin lyase related protein [Methanosarcina...	177.0	[0..4]	[278..198]
gi\|53686724 - gi\|53686724\|ref\|ZP_00105992.2\| COG1413: FOG: HEAT repeat [Nostoc punctiforme PCC 73102]	175.0	[0..4]	[277..471]
gi\|38111073, gi\|... - gi\|39971489\|ref\|XP_367135.1\| hypothetical protein MGG_07060 [Magnaporthe grisea 70-15], gb\|EAA56705....	175.0	[0..21]	[278..122]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTYQKRKA SKEYGLYNQC KKLNDDELFR LLDDHNSLKR ISSARVLQLR GGQDAVRLAI  60
   61 EFCSDKNYIR RDIGAFILGQ IKICKKCEDN VFNILNNMAL NDKSACVRAT AIESTAQRCK 120
  121 KNPIYSPKIV EQSQITAFDK STNVRRATAF AISVINDKAT IPLLINLLKD PNGDVRNWAA 180
  181 FAININKYDN SDIRDCFVEM LQDKNEEVRI EAIIGLSYRK DKRVLSVLCD ELKKNTVYDD 240
  241 IIEAAGELGD KTLLPVLDTM LYKFDDNEII TSAIDKLKRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.09691
Match:	1oyzA
Description:	X-RAY STRUCTURE OF YIBA_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET31.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.373576425899935	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: