YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1857_AQUAE, YI5...
Organism:	Aquifex aeolicus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1857_AQUAE, YI5....

Description	E-value	Query Range	Subject Range
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	172.0	[0..7]	[115..89]
gi\|108766804, gi... - gi\|68560649\|ref\|ZP_00599960.1\| HesB/YadR/YfhF [Rubrobacter xylanophilus DSM 9941], gi\|68513180\|gb\|EA...	172.0	[0..1]	[115..27]
ERPA2_METCA - Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1 ERPA2_METCA - Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB ...	170.0	[0..9]	[114..24]
ERPA_POLSQ - Putative iron-sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioti...	170.0	[0..1]	[115..1]
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	170.0	[0..5]	[114..13]
ERPA_AROAE - Putative iron-sulfur cluster insertion protein ErpA OS=Aromatoleum aromaticum (strain EbN1) GN=erpA ...	170.0	[0..6]	[115..7]
gi\|31615730 - gi\|31615730\|pdb\|1NWB\|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Nor...	169.0	[0..2]	[116..2]
ERPA_DECAR - Putative iron-sulfur cluster insertion protein ErpA OS=Dechloromonas aromatica (strain RCB) GN=erpA ...	169.0	[0..9]	[115..10]
ERPA_METFK - Putative iron-sulfur cluster insertion protein ErpA OS=Methylobacillus flagellatus (strain KT / ATCC...	169.0	[0..7]	[115..9]
ERPA_CHRVO - Putative iron-sulfur cluster insertion protein ErpA OS=Chromobacterium violaceum (strain ATCC 12472 ... ERPA_CHRVO - Putative iron-sulfur cluster insertion protein erpA OS=Chromobacterium violaceum GN=erpA PE=3 SV=1	168.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQAQQFIF KVTDKAVEEI KKVAQENNIE NPILRIRVVP GGCSGFQYAM GFDDTVEEGD  60
   61 HVFEYDGVKV VIDPFSMPYV NGAELDYVVD FMGGGFTIRN PNATGSCGCG SSFSCG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1nwbA
Description:	Hypothetical protein Aq 1857
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.80248983815833	bayes_pls_golite062009
iron-sulfur cluster binding	1.16909449675237	bayes_pls_golite062009
metal cluster binding	1.16909449675237	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: